A comprehensive resource of interacting protein regions for refining human transcription factor networks (Q21091144)

identical protein binding

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

10

Masaru Tomita

Masaru

Tomita

1 reference

16 August 2022

Etsuko Miyamoto-Sato

1

Etsuko

Miyamoto-Sato

1 reference

16 August 2022

Shigeo Fujimori

2

Shigeo

Fujimori

1 reference

16 August 2022

Masamichi Ishizaka

3

Masamichi

Ishizaka

1 reference

16 August 2022

Naoya Hirai

4

Naoya

Hirai

1 reference

16 August 2022

Kazuyo Masuoka

5

Kazuyo

Masuoka

1 reference

16 August 2022

Rintaro Saito

6

Rintaro

Saito

1 reference

16 August 2022

Yosuke Ozawa

7

Yosuke

Ozawa

1 reference

16 August 2022

Katsuya Hino

8

Katsuya

Hino

1 reference

16 August 2022

Takanori Washio

9

Takanori

Washio

1 reference

16 August 2022

Tatsuhiro Yamashita

11

Tatsuhiro

Yamashita

1 reference

16 August 2022

Tomohiro Oshikubo

12

Tomohiro

Oshikubo

1 reference

16 August 2022

Hidetoshi Akasaka

13

Hidetoshi

Akasaka

1 reference

16 August 2022

Jun Sugiyama

14

Jun

Sugiyama

1 reference

16 August 2022

Yasuo Matsumoto

15

Yasuo

Matsumoto

1 reference

16 August 2022

Hiroshi Yanagawa

16

Hiroshi

Yanagawa

1 reference

Creative Commons Attribution 4.0 International

16 August 2022

language of work or name

English

0 references

publication date

2010

0 references

published in

PLOS One

0 references

volume

5

0 references

issue

2

0 references

page(s)

e9289

0 references

copyright license

start time

24 February 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Large-scale mapping of human protein-protein interactions by mass spectrometry

19 March 2017

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Pfam: clans, web tools and services

19 March 2017

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Towards a proteome-scale map of the human protein–protein interaction network

19 March 2017

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A human protein-protein interaction network: a resource for annotating the proteome

19 March 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

19 March 2017

1 reference

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MgF(3)(-) as a transition state analog of phosphoryl transfer

19 March 2017

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Smads bind directly to the Jun family of AP-1 transcription factors

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Smad3 and Smad4 cooperate with c-Jun/c-Fos to mediate TGF-beta-induced transcription

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

RNA-peptide fusions for the in vitro selection of peptides and proteins

19 March 2017

1 reference

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Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

19 March 2017

1 reference

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Intrinsically unstructured proteins and their functions

19 March 2017

1 reference

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Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA

19 March 2017

1 reference

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Solving the structure of human H ferritin by genetically engineering intermolecular crystal contacts

19 March 2017

1 reference

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Network biology: understanding the cell's functional organization

19 March 2017

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

19 March 2017

1 reference

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

19 March 2017

1 reference

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A generic protein purification method for protein complex characterization and proteome exploration

19 March 2017

1 reference

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A novel genetic system to detect protein-protein interactions

19 March 2017

1 reference

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A high resolution protein interaction map of the yeast Mediator complex

19 March 2017

1 reference

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A protein interaction map of Drosophila melanogaster

19 March 2017

1 reference

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Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens

19 March 2017

1 reference

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High-throughput mapping of a dynamic signaling network in mammalian cells

19 March 2017

1 reference

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Reaching for high-hanging fruit in drug discovery at protein-protein interfaces

19 March 2017

1 reference

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A map of the interactome network of the metazoan C. elegans

7 April 2017

1 reference

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Large-scale analysis of the human and mouse transcriptomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Lethality and centrality in protein networks

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Interaction network containing conserved and essential protein complexes in Escherichia coli

7 April 2017

1 reference

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Evidence for dynamically organized modularity in the yeast protein-protein interaction network

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

A protein interaction network of the malaria parasite Plasmodium falciparum

7 April 2017

1 reference

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Role of intrinsically disordered protein regions/domains in transcriptional regulation

28 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Inferring function using patterns of native disorder in proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

A domain-based approach to predict protein-protein interactions

12 September 2017

1 reference

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Relating three-dimensional structures to protein networks provides evolutionary insights

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Intrinsic disorder and functional proteomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein-protein interactions and complexes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Scanning the human proteome for calmodulin-binding proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Analyzing yeast protein-protein interaction data obtained from different sources

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Smad3/AP-1 interactions control transcriptional responses to TGF-beta in a promoter-specific manner

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

In vitro selection and characterization of Bcl-X(L)-binding proteins from a mix of tissue-specific mRNA display libraries

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Genome-wide protein interaction maps using two-hybrid systems

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Specific bonding of puromycin to full-length protein at the C-terminus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Highly stable and efficient mRNA templates for mRNA-protein fusions and C-terminally labeled proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2827538

Protein-protein interaction networks and biology--what's the connection?

27 September 2017

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0009289

In vitro virus: bonding of mRNA bearing puromycin at the 3'-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0009289

Toward functional analysis of protein interactome using "in vitro virus": in silico analyses of Fos/Jun interactors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0009289

The protein trinity--linking function and disorder.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0009289

Disorder and sequence repeats in hub proteins and their implications for network evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0009289

Probabilistic model of the human protein-protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0009289

Role of intrinsic disorder in transient interactions of hub proteins

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20195357

12 December 2020

inferred from PubMed ID database lookup

Intrinsic disorder in yeast transcriptional regulatory network

1 reference

https://pubmed.ncbi.nlm.nih.gov/20195357

12 December 2020

inferred from PubMed ID database lookup

Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/20195357

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0009289

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