Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes (Q21202053)

17 August 2022

1

Anthony Levasseur

Anthony

Levasseur

1 reference

1000812569

17 August 2022

Pedro Maldonado Coutinho

4

Pedro M Coutinho

Pedro M

Coutinho

1 reference

17 August 2022

3

Vincent Lombard

Vincent

Lombard

1 reference

17 August 2022

2

Elodie

Drula

Elodie Drula

1 reference

1000812569

Biotechnology for Biofuels

17 August 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

0 references

volume

6

0 references

issue

1

0 references

page(s)

41

0 references

cites work

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Updating the sequence-based classification of glycosyl hydrolases

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A classification of glycosyl hydrolases based on amino acid sequence similarities

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

19 March 2017

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The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

19 March 2017

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Genome sequence of the model mushroom Schizophyllum commune

19 March 2017

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Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

19 March 2017

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NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions

19 March 2017

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Structural Basis for Substrate Targeting and Catalysis by Fungal Polysaccharide Monooxygenases

19 March 2017

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Characterization of the chitinolytic machinery of Enterococcus faecalis V583 and high-resolution structure of its oxidative CBM33 enzyme

19 March 2017

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Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components

19 March 2017

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Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family

19 March 2017

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The FET3 gene of S. cerevisiae encodes a multicopper oxidase required for ferrous iron uptake

19 March 2017

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Purification and characterization of vanillyl-alcohol oxidase from Penicillium simplicissimum. A novel aromatic alcohol oxidase containing covalently bound FAD

19 March 2017

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The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics

19 March 2017

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A high-throughput screening of genes that encode proteins transported into the endoplasmic reticulum in mammalian cells

19 March 2017

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The origins of genome complexity

22 April 2017

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TM4: a free, open-source system for microarray data management and analysis

7 April 2017

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Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina

7 April 2017

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Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

12 September 2017

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Heterologous production of cellobiose dehydrogenases from the basidiomycete Coprinopsis cinerea and the ascomycete Podospora anserina and their effect on saccharification of wheat straw

12 September 2017

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Novel enzymes for the degradation of cellulose

12 September 2017

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

12 September 2017

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Genome analyses highlight the different biological roles of cellulases

12 September 2017

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Fungal aryl-alcohol oxidase: a peroxide-producing flavoenzyme involved in lignin degradation.

12 September 2017

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The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose.

12 September 2017

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Pathways for degradation of lignin in bacteria and fungi

12 September 2017

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Cleavage of cellulose by a CBM33 protein

12 September 2017

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Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this

12 September 2017

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An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides

12 September 2017

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A hierarchical classification of polysaccharide lyases for glycogenomics

12 September 2017

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Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study

12 September 2017

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New and classic families of secreted fungal heme peroxidases.

12 September 2017

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Laccases and their natural mediators: biotechnological tools for sustainable eco-friendly processes

12 September 2017

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Lignin-modifying enzymes in filamentous basidiomycetes--ecological, functional and phylogenetic review

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Enzymatic delignification of plant cell wall: from nature to mill

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

PeroxiBase: a database with new tools for peroxidase family classification

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Purification and characterization of an intracellular NADH: quinone reductase from Trametes versicolor.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Characteristics of Gloeophyllum trabeum alcohol oxidase, an extracellular source of H2O2 in brown rot decay of wood.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Occurrence and biocatalytic potential of carbohydrate oxidases.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Cellobiose dehydrogenase--a flavocytochrome from wood-degrading, phytopathogenic and saprotropic fungi.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Purification and Characterization of a 1,4-Benzoquinone Reductase from the Basidiomycete Phanerochaete chrysosporium

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Fungal laccases - occurrence and properties

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Free radical catalysis by galactose oxidase

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Molecular mechanisms of iron uptake in fungi

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Cellobiose dehydrogenase-an extracellular fungal flavocytochrome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Fungal pyranose oxidases: occurrence, properties and biotechnical applications in carbohydrate chemistry

12 September 2017

1 reference

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A critical review of cellobiose dehydrogenases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Generation of evolutionary novelty by functional shift

12 September 2017

1 reference

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GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

An NADH:quinone oxidoreductase active during biodegradation by the brown-rot basidiomycete Gloeophyllum trabeum

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Structure, organization, and transcriptional regulation of a family of copper radical oxidase genes in the lignin-degrading basidiomycete Phanerochaete chrysosporium

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases.

27 September 2017

1 reference

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Catalytic properties and classification of cellobiose dehydrogenases from ascomycetes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa

30 May 2018

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https://api.crossref.org/works/10.1186%2F1754-6834-6-41

The non-catalytic chitin-binding protein CBP21 from Serratia marcescens is essential for chitin degradation.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1754-6834-6-41

FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

21 January 2018

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https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Ancestral gene fusion in cellobiose dehydrogenases reflects a specific evolution of GMC oxidoreductases in fungi.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Role of Horizontal Gene Transfer in the Evolution of Fungi.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Fungal laccase, cellobiose dehydrogenase, and chemical mediators: combined actions for the decolorization of different classes of textile dyes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Assessment of the joint effect of laccase and cellobiose dehydrogenase on the decolouration of different synthetic dyes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1754-6834-6-41

The emerging role for bacteria in lignin degradation and bio-product formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of -amylase-related proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Cloning, expression, and characterization of a cellobiose dehydrogenase from Thielavia terrestris induced under cellulose growth conditions

21 January 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3620520

Differential decolorization of textile dyes in mixtures and the joint effect of laccase and cellobiose dehydrogenase activities present in extracellular extracts from Funalia trogii

29 November 2018

1 reference

https://api.crossref.org/works/10.1186%2F1754-6834-6-41

Cellobiose oxidase from Phanerochaete chrysosporium as a source of Fenton's reagent

21 January 2018

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12 December 2020

Extracellular laccases in ascomycetes Trichoderma atroviride and Trichoderma harzianum

1 reference

12 December 2020

Is cellobiose oxidase from Phanerochaete chrysosporium a one-electron reductase?

1 reference

12 December 2020

Glyoxal oxidase from Phanerochaete chrysosporium is a new radical-copper oxidase

1 reference

12 December 2020

Characterization of kinetics and thermostability of Acremonium strictum glucooligosaccharide oxidase

1 reference

12 December 2020

Production of Hydroxyl Radical by the Synergistic Action of Fungal Laccase and Aryl Alcohol Oxidase

1 reference

12 December 2020

Demonstration of laccase-based removal of lignin from wood and non-wood plant feedstocks

1 reference

12 December 2020

Identifiers

DOI

10.1186/1754-6834-6-41

1 reference

1000812569

0 references

1 reference

1 reference

PubMed publication ID

23514094

1 reference