BLAST+: architecture and applications (Q21284368)

Europe PubMed Central

title

BLAST+: architecture and applications (English)

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2

George Coulouris

George

Coulouris

1 reference

19 August 2022

Christiam Camacho

1

Christiam

Camacho

1 reference

19 August 2022

Vahram Avagyan

3

Vahram

Avagyan

1 reference

19 August 2022

Ning Ma

4

Ning

Ma

1 reference

19 August 2022

Jason Papadopoulos

5

Jason

Papadopoulos

1 reference

19 August 2022

Kevin Bealer

6

Kevin

Bealer

1 reference

19 August 2022

Thomas L Madden

7

Thomas L

Madden

1 reference

BLAT—The BLAST-Like Alignment Tool

19 August 2022

language of work or name

English

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publication date

2009

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published in

BMC Bioinformatics

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volume

10

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issue

1

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page(s)

421

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Initial sequencing and comparative analysis of the mouse genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

A greedy algorithm for aligning DNA sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

NCBI BLAST: a better web interface

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Analysis of compositionally biased regions in sequence databases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Database indexing for production MegaBLAST searches

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

WindowMasker: window-based masker for sequenced genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

Protein sequence similarity searches using patterns as seeds

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

A deterministic finite automaton for faster protein hit detection in BLAST.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2803857

A fast and symmetric DUST implementation to mask low-complexity DNA sequences

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20003500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-10-421

1 reference

journals/bmcbi/CamachoCAMPBM09

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

release_qhqpojpbuvh4zffs4dvqs4beyi

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Fatcat ID

0 references

1 reference

1 reference

PubMed publication ID

20003500

1 reference