Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary (Q21283883)

19 August 2022

17

Svante Pääbo

Svante

Pääbo

1 reference

19 August 2022

1

Johannes Krause

Johannes

Krause

1 reference

19 August 2022

18

Michael Hofreiter

Michael

Hofreiter

1 reference

19 August 2022

Anna-Sapfo Malaspinas

4

object named as

Anna-Sapfo Malaspinas

Anna-Sapfo

Malaspinas

1 reference

Sergios-Orestis Kolokotronis

19 August 2022

5

object named as

Sergios-Orestis Kolokotronis

Sergios-Orestis

Kolokotronis

1 reference

19 August 2022

15

Alan Cooper

Alan

Cooper

1 reference

Leopoldo Héctor Soibelzon

19 August 2022

7

Leopoldo Soibelzon

Leopoldo

Soibelzon

1 reference

19 August 2022

6

Mathias Stiller

Mathias

Stiller

1 reference

ORCID Public Data File 2021

19 August 2022

1 reference

10

Adrian W

Briggs

Adrian W Briggs

1 reference

19 August 2022

8

Helen

Spriggs

Helen Spriggs

1 reference

19 August 2022

Tina Unger

2

Tina

Unger

1 reference

19 August 2022

Aline Noçon

3

Aline

Noçon

1 reference

19 August 2022

Paul H Dear

9

Paul H

Dear

1 reference

19 August 2022

Sarah C E Bray

11

0 references

Stephen J O'Brien

12

Stephen J

O'Brien

1 reference

19 August 2022

Gernot Rabeder

13

Gernot

Rabeder

1 reference

19 August 2022

Paul Matheus

14

Paul

Matheus

1 reference

Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

19 August 2022

language of work or name

English

0 references

publication date

2008

0 references

published in

BMC Evolutionary Biology

0 references

volume

8

0 references

issue

1

0 references

page(s)

220

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Patterns of damage in genomic DNA sequences from a Neandertal

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

The first skull of the earliest giant panda

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

BEAST: Bayesian evolutionary analysis by sampling trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

PAML: a program package for phylogenetic analysis by maximum likelihood

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Evolutionary trees from DNA sequences: A maximum likelihood approach

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

The late Miocene radiation of modern Felidae: a genetic assessment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

African Populations and the Evolution of Human Mitochondrial DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Placing confidence limits on the molecular age of the human-chimpanzee divergence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Carbon dioxide starvation, the development of C4 ecosystems, and mammalian evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Automatic annotation of organellar genomes with DOGMA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

An approximately unbiased test of phylogenetic tree selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

A new method for calculating evolutionary substitution rates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

The general stochastic model of nucleotide substitution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics

28 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Mitogenomic analyses of caniform relationships

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Ancient DNA analysis reveals divergence of the cave bear, Ursus spelaeus, and brown bear, Ursus arctos, lineages

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Rapid radiation events in the family Ursidae indicated by likelihood phylogenetic estimation from multiple fragments of mtDNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Environmental hypotheses of hominin evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

A phylogeny of the bears (Ursidae) inferred from complete sequences of three mitochondrial genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Phylogeography of brown bears (Ursus arctos) of Alaska and paraphyly within the Ursidae

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Phylogenetic Relationships of Bears (the Ursidae) Inferred from Mitochondrial DNA Sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Sampling properties of DNA sequence data in phylogenetic analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Multiplex amplification of ancient DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Evidence for reproductive isolation between cave bear populations

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Mitochondrial DNA polymorphism, phylogeography, and conservation genetics of the brown bear Ursus arctos in Europe.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2518930

Phylogeography of mitochondrial DNA variation in brown bears and polar bears

29 November 2018

1 reference

12 December 2020

Conserved primers for rapid sequencing of the complete mitochondrial genome from carnivores, applied to three species of bears

1 reference

12 December 2020

Contribution of homoplasy and of ancestral polymorphism to the evolution of genes in anthropoid primates

1 reference

12 December 2020

A molecular solution to the riddle of the giant panda's phylogeny

1 reference

12 December 2020

A comparative chromosome banding analysis of the Ursidae and their relationship to other carnivores

1 reference

12 December 2020

MAJOR PATTERNS IN THE HISTORY OF CARNIVOROUS MAMMALS

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2148-8-220

Evidence for an early opening of the Bering Strait

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2148-8-220

History of the Mediterranean salinity crisis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2148-8-220

Tertiary Mammal Evolution in the Context of Changing Climates, Vegetation, and Tectonic Events

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2148-8-220

Testing Significance of Incongruence

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2148-8-220

Phylogenetic placement of the Tasmanian spider Acrobleps hygrophilus (Araneae, Anapidae) with comments on the evolution of the capture web in Araneoidea

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/1471-2148-8-220

Identifiers

DOI

10.1186/1471-2148-8-220

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-220

1 reference

9 September 2019

1 reference

1 reference

PubMed publication ID

18662376

1 reference