Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L (Q22066056)

7 February 2023

Shusei Sato

1

Shusei

Sato

1 reference

7 February 2023

Hideki Hirakawa

2

Hideki

Hirakawa

1 reference

7 February 2023

Sachiko Isobe

3

Sachiko

Isobe

1 reference

7 February 2023

Eigo Fukai

4

Eigo

Fukai

1 reference

7 February 2023

Akiko Watanabe

5

Akiko

Watanabe

1 reference

7 February 2023

Midori Kato

6

Midori

Kato

1 reference

7 February 2023

Kumiko Kawashima

7

Kumiko

Kawashima

1 reference

7 February 2023

Chiharu Minami

8

Chiharu

Minami

1 reference

7 February 2023

Akiko Muraki

9

Akiko

Muraki

1 reference

7 February 2023

Naomi Nakazaki

10

Naomi

Nakazaki

1 reference

7 February 2023

Chika Takahashi

11

Chika

Takahashi

1 reference

7 February 2023

Shinobu Nakayama

12

Shinobu

Nakayama

1 reference

7 February 2023

Yoshie Kishida

13

Yoshie

Kishida

1 reference

7 February 2023

Mitsuyo Kohara

14

Mitsuyo

Kohara

1 reference

7 February 2023

Manabu Yamada

15

Manabu

Yamada

1 reference

7 February 2023

Hisano Tsuruoka

16

Hisano

Tsuruoka

1 reference

7 February 2023

Shigemi Sasamoto

17

Shigemi

Sasamoto

1 reference

7 February 2023

Satoshi Tabata

18

Satoshi

Tabata

1 reference

7 February 2023

Tomoyuki Aizu

19

Tomoyuki

Aizu

1 reference

7 February 2023

Atsushi Toyoda

20

Atsushi

Toyoda

1 reference

7 February 2023

Tadasu Shin-i

21

Tadasu

Shin-i

1 reference

7 February 2023

Yohei Minakuchi

22

Yohei

Minakuchi

1 reference

7 February 2023

Yuji Kohara

23

Yuji

Kohara

1 reference

7 February 2023

Asao Fujiyama

24

Asao

Fujiyama

1 reference

7 February 2023

Suguru Tsuchimoto

25

Suguru

Tsuchimoto

1 reference

7 February 2023

Shin'ichiro Kajiyama

26

Shin'ichiro

Kajiyama

1 reference

7 February 2023

Eri Makigano

27

Eri

Makigano

1 reference

7 February 2023

Nobuko Ohmido

28

Nobuko

Ohmido

1 reference

7 February 2023

Nakako Shibagaki

29

Nakako

Shibagaki

1 reference

7 February 2023

Joyce A Cartagena

30

Joyce A

Cartagena

1 reference

7 February 2023

Naoki Wada

31

Naoki

Wada

1 reference

7 February 2023

Tsutomu Kohinata

32

Tsutomu

Kohinata

1 reference

7 February 2023

Alipour Atefeh

33

Alipour

Atefeh

1 reference

7 February 2023

Shota Yuasa

34

Shota

Yuasa

1 reference

7 February 2023

Kiichi Fukui

36

Kiichi

Fukui

1 reference

Draft genome sequence of the oilseed species Ricinus communis

7 February 2023

language of work or name

English

0 references

publication date

February 2011

0 references

number of pages

12

1 reference

based on heuristic

inferred from page(s)

published in

DNA Research

0 references

volume

18

0 references

issue

1

0 references

page(s)

65-76

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

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19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Genome structure of the legume, Lotus japonicus

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Application of a superword array in genome assembly

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

BLAT—The BLAST-Like Alignment Tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Gene ontology: tool for the unification of biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

KEGG: Kyoto Encyclopedia of Genes and Genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

GeneMark.hmm: new solutions for gene finding

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

The neighbor-joining method: a new method for reconstructing phylogenetic trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Primer3 on the WWW for general users and for biologist programmers

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Prediction of complete gene structures in human genomic DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Biofuel: the little shrub that could--maybe

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

A greedy algorithm for aligning DNA sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

AmiGO: online access to ontology and annotation data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Automated de novo identification of repeat sequence families in sequenced genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

NB-LRR proteins: pairs, pieces, perception, partners, and pathways

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Figaro: a novel statistical method for vector sequence removal

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Role of SVP in the control of flowering time by ambient temperature in Arabidopsis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Evolutionary complexity of MADS complexes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Expression of a ribosome inactivating protein (curcin 2) in Jatropha curcas is induced by stress

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

An ancestral MADS-box gene duplication occurred before the divergence of plants and animals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

The SWISS-PROT protein sequence data bank and its new supplement TREMBL

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Rapid analysis of Jatropha curcas gene functions by virus-induced gene silencing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Expression, purification and anti-tumor activity of curcin

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Cytosolic triacylglycerol biosynthetic pathway in oilseeds. Molecular cloning and expression of peanut cytosolic diacylglycerol acyltransferase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Studies on the proteins from the seeds of Croton tiglium and of Jatropha curcas. Toxic properties and inhibition of protein synthesis in vitro

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSQ030

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSQ030

Characterization of a new stearoyl-acyl carrier protein desaturase gene from Jatropha curcas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSQ030

Novel 12-deoxy-16-hydroxyphorbol diesters isolated from the seed oil of Jatropha curcas

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSQ030

Stress-induced curcin-L promoter in leaves of Jatropha curcas L. and characterization in transgenic tobacco

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSQ030

Molecular cloning of SVP: a negative regulator of the floral transition in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSQ030

Use of inadequate data and methodological errors lead to an overestimation of the water footprint of Jatropha curcas.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Antitumor effects of curcin from seeds of Jatropha curcas

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Methods for comparing a DNA sequence with a protein sequence.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3041505

Genome-wide analysis of the MADS-box gene family in Populus trichocarpa

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21149391

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genomic analysis of the terpenoid synthase ( AtTPS) gene family of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/21149391

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DNARES/DSQ030

1 reference

release_rcnh7e3tbvh3tf2b3iv7f34nle

Fatcat ID

0 references

1 reference

1 reference

1 reference