Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection (Q22122301)

7 February 2023

2

Takeshi Ara

Takeshi

Ara

1 reference

7 February 2023

10

Hirotada Mori

Hirotada

Mori

1 reference

7 February 2023

Tomoya Baba

1

Tomoya

Baba

1 reference

7 February 2023

Miki Hasegawa

3

Miki

Hasegawa

1 reference

7 February 2023

Yuki Takai

4

Yuki

Takai

1 reference

7 February 2023

Yoshiko Okumura

5

Yoshiko

Okumura

1 reference

7 February 2023

Miki Baba

6

Miki

Baba

1 reference

7 February 2023

Kirill A Datsenko

7

Kirill A

Datsenko

1 reference

7 February 2023

Barry L Wanner

9

Barry L

Wanner

1 reference

Molecular Systems Biology

7 February 2023

language of work or name

English

0 references

publication date

2006

0 references

published in

0 references

volume

2

0 references

page(s)

2006.0008

0 references

cites work

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

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Large-scale identification of protein-protein interaction of Escherichia coli K-12

19 March 2017

1 reference

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Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

19 March 2017

1 reference

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Essential Bacillus subtilis genes

19 March 2017

1 reference

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Functional profiling of the Saccharomyces cerevisiae genome

19 March 2017

1 reference

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

19 March 2017

1 reference

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The complete genome sequence of Escherichia coli K-12

19 March 2017

1 reference

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Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

19 March 2017

1 reference

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A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae

19 March 2017

1 reference

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research

19 March 2017

1 reference

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Prokaryotic toxin-antitoxin stress response loci

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Comprehensive transposon mutant library of Pseudomonas aeruginosa

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

SecM facilitates translocase function of SecA by localizing its biosynthesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Translation arrest of SecM is essential for the basal and regulated expression of SecA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Systematic mutagenesis of the Escherichia coli genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

MBGD: microbial genome database for comparative analysis

12 September 2017

1 reference

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Genome-wide analysis of deoxyadenosine methyltransferase-mediated control of gene expression in Escherichia coli

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Functional genomics of Escherichia coli in Japan

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

The rpoE gene of Escherichia coli, which encodes sigma E, is essential for bacterial growth at high temperature

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Isolation and characterization of Escherichia coli mutants that lack the heat shock sigma factor sigma 32.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

What is known about the structure and function of the Escherichia coli protein FirA?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Identification of the two missing bacterial genes involved in thiamine salvage: thiamine pyrophosphokinase and thiamine kinase

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Dysfunctional MreB inhibits chromosome segregation in Escherichia coli.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Replacement of the folC gene, encoding folylpolyglutamate synthetase-dihydrofolate synthetase in Escherichia coli, with genes mutagenized in vitro

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Tandem genetic duplications in phage and bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Insertional transposon mutagenesis by electroporation of released Tn5 transposition complexes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Mutants lacking individual ribosomal proteins as a tool to investigate ribosomal properties

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

The morphogenetic MreBCD proteins of Escherichia coli form an essential membrane-bound complex.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Genome-scale identification of conditionally essential genes in E. coli by DNA microarrays.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Global metabolic response of Escherichia coli to gnd or zwf gene-knockout, based on 13C-labeling experiments and the measurement of enzyme activities

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Analysis of metabolic and physiological responses to gnd knockout in Escherichia coli by using C-13 tracer experiment and enzyme activity measurement

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Cell biology. Alliance launched to model E. coli.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

Systematic search for zinc-binding proteins in Escherichia coli

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1681482

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

29 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB4100050

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/MSB4100050

1 reference

release_62tsm4b4kbeyfe6jze5u5qt3xu

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/62tsm4b4kbeyfe6jze5u5qt3xu

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

1 reference