Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions (Q34001429)

30 July 2017

title

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions (English)

1 reference

30 July 2017

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Sebastian M Waszak

3

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Jan Korbel

object named as

Jan O Korbel

5

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Simon Anders

object named as

Simon Anders

2

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Wolfgang Huber

object named as

Wolfgang Huber

4

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author name string

Andreas Schlattl

1

1 reference

30 July 2017

publication date

23 August 2011

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30 July 2017

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30 July 2017

volume

21

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30 July 2017

issue

12

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30 July 2017

page(s)

2004-2013

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Mapping copy number variation by population-scale genome sequencing

30 July 2017

cites work

1 reference

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28 July 2018

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Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity

28 July 2018

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Copy number variation modifies expression time courses

28 July 2018

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Diversity of human copy number variation and multicopy genes

28 July 2018

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A map of human genome variation from population-scale sequencing

28 July 2018

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Differential expression analysis for sequence count data

28 July 2018

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Towards a comprehensive structural variation map of an individual human genome

28 July 2018

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A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies

28 July 2018

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Characterization of missing human genome sequences and copy-number polymorphic insertions

28 July 2018

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Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

28 July 2018

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Variation in transcription factor binding among humans

28 July 2018

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Transcriptome genetics using second generation sequencing in a Caucasian population

28 July 2018

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Genomic responses to abnormal gene dosage: the X chromosome improved on a common strategy

28 July 2018

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Fast and SNP-tolerant detection of complex variants and splicing in short reads

28 July 2018

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APOBEC3B deletion and risk of HIV-1 acquisition

28 July 2018

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Common regulatory variation impacts gene expression in a cell type-dependent manner

28 July 2018

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Deletion polymorphism of SIGLEC14 and its functional implications

28 July 2018

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Copy number variants, diseases and gene expression

28 July 2018

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High-resolution mapping of expression-QTLs yields insight into human gene regulation

28 July 2018

1 reference

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Integrated detection and population-genetic analysis of SNPs and copy number variation

28 July 2018

1 reference

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The current excitement about copy-number variation: how it relates to gene duplications and protein families

28 July 2018

1 reference

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Mapping the genetic architecture of gene expression in human liver

28 July 2018

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Mapping and sequencing of structural variation from eight human genomes

28 July 2018

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Psoriasis is associated with increased beta-defensin genomic copy number

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Paired-end mapping reveals extensive structural variation in the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Classification of human chromosome 21 gene-expression variations in Down syndrome: impact on disease phenotypes

28 July 2018

1 reference

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FCGR3B copy number variation is associated with susceptibility to systemic, but not organ-specific, autoimmunity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Relative impact of nucleotide and copy number variation on gene expression phenotypes

28 July 2018

1 reference

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Global variation in copy number in the human genome

28 July 2018

1 reference

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Genomic disorders: molecular mechanisms for rearrangements and conveyed phenotypes

28 July 2018

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A haplotype map of the human genome

28 July 2018

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The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility

28 July 2018

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Detection of large-scale variation in the human genome

28 July 2018

1 reference

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Large-scale copy number polymorphism in the human genome

28 July 2018

1 reference

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A human genome structural variation sequencing resource reveals insights into mutational mechanisms

28 July 2018

1 reference

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Genetics and beyond--the transcriptome of human monocytes and disease susceptibility

29 October 2018

1 reference

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Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing

29 October 2018

1 reference

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Expression in aneuploid Drosophila S2 cells

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Origins and functional impact of copy number variation in the human genome

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Duplications of noncoding elements 5' of SOX9 are associated with brachydactyly-anonychia.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Revealing the architecture of gene regulation: the promise of eQTL studies

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Genetic variations of the CDC2L2 gene are associated with type 2 diabetes in a Han Chinese cohort.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Common deletion polymorphisms in the human genome.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

Fine-scale structural variation of the human genome

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

A survey of genetic human cortical gene expression

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3227091

29 October 2018

Identifiers

DOI

10.1101/GR.122614.111

1 reference

release_upcmj4sgrracdco6633oysn76m

30 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/upcmj4sgrracdco6633oysn76m

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3227091

1 reference

30 July 2017

1 reference