Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome (Q34034406)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

title

Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome (English)

1 reference

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18 February 2020

1 reference

1

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18 February 2020

author name string

Greg Donahue

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

Kenneth S Zaret

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

language of work or name

English

0 references

publication date

15 November 2012

1 reference

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18 February 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

volume

151

1 reference

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18 February 2020

issue

5

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18 February 2020

page(s)

994-1004

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

18 February 2020

cites work

1 reference

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Chromatin-modifying enzymes as modulators of reprogramming

5 July 2018

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Polycomb-repressed genes have permissive enhancers that initiate reprogramming

5 July 2018

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Pioneer transcription factors: establishing competence for gene expression

5 July 2018

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Molecular insights into reprogramming-initiation events mediated by the OSKM gene regulatory network

5 July 2018

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Direct reprogramming of somatic cells is promoted by maternal transcription factor Glis1.

5 July 2018

1 reference

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MEME-ChIP: motif analysis of large DNA datasets

5 July 2018

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Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency

5 July 2018

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Progress in understanding reprogramming to the induced pluripotent state

5 July 2018

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The structure of the Klf4 DNA-binding domain links to self-renewal and macrophage differentiation

5 July 2018

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

5 July 2018

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Reprogramming factor expression initiates widespread targeted chromatin remodeling

5 July 2018

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

5 July 2018

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Functional genomics reveals a BMP-driven mesenchymal-to-epithelial transition in the initiation of somatic cell reprogramming

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

A mesenchymal-to-epithelial transition initiates and is required for the nuclear reprogramming of mouse fibroblasts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

GREAT improves functional interpretation of cis-regulatory regions

5 July 2018

1 reference

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Dynamic single-cell imaging of direct reprogramming reveals an early specifying event

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Forcing cells to change lineages

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Direct cell reprogramming is a stochastic process amenable to acceleration

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Human DNA methylomes at base resolution show widespread epigenomic differences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Suppression of induced pluripotent stem cell generation by the p53-p21 pathway

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

A p53-mediated DNA damage response limits reprogramming to ensure iPS cell genomic integrity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Linking the p53 tumour suppressor pathway to somatic cell reprogramming

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Role of the murine reprogramming factors in the induction of pluripotency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Model-based analysis of ChIP-Seq (MACS)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

A drug-inducible system for direct reprogramming of human somatic cells to pluripotency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

A high-efficiency system for the generation and study of human induced pluripotent stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Generation of human-induced pluripotent stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Dissecting direct reprogramming through integrative genomic analysis

5 July 2018

1 reference

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Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

5 July 2018

1 reference

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Sequential expression of pluripotency markers during direct reprogramming of mouse somatic cells

5 July 2018

1 reference

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Why myc? An unexpected ingredient in the stem cell cocktail

5 July 2018

1 reference

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An extended transcriptional network for pluripotency of embryonic stem cells

5 July 2018

1 reference

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Generation of human induced pluripotent stem cells from dermal fibroblasts

5 July 2018

1 reference

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Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Induction of pluripotent stem cells from adult human fibroblasts by defined factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

VISTA Enhancer Browser--a database of tissue-specific human enhancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Feeder-independent culture of human embryonic stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Core transcriptional regulatory circuitry in human embryonic stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Crystal structure of a POU/HMG/DNA ternary complex suggests differential assembly of Oct4 and Sox2 on two enhancers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Embryonic stem cell lines derived from human blastocysts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Combining evidence using p-values: application to sequence homology searches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

c-Myc is dispensable for direct reprogramming of mouse fibroblasts.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3508134

Derivation and maintenance of human embryonic stem cells from poor-quality in vitro fertilization embryos

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23159369

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Optimized digital counting colonies of clonogenic assays using ImageJ software and customized macros: comparison with manual counting

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.3109/09553002.2011.622033

Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.CELL.2012.08.023

Identifiers

DOI

10.1016/J.CELL.2012.09.045

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json

18 February 2020

PubMed publication ID

23159369

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23159369%20AND%20SRC:MED&resulttype=core&format=json