Diversity and dynamics of the Drosophila transcriptome (Q34123037)

31 July 2017

title

Diversity and dynamics of the Drosophila transcriptome (English)

1 reference

31 July 2017

0 references

0 references

1 reference

34

1 reference

31 July 2017

Jiayu Wen

8

0 references

Anastasia A. Samsonova

Anastasia A Samsonova

26

0 references

Brenton R. Graveley

Brenton R Graveley

40

0 references

Norbert Perrimon

Norbert Perrimon

39

0 references

David Sturgill

David Sturgill

25

0 references

Piero Carninci

Piero Carninci

32

0 references

Eric C Lai

Eric C Lai

37

0 references

Susan E. Celniker

41

Susan E Celniker

1 reference

31 July 2017

17

David Miller

1 reference

31 July 2017

31

Peter J Bickel

1 reference

31 July 2017

10

Ana Maria Suzuki

1 reference

31 July 2017

30

Justen Andrews

1 reference

31 July 2017

James B Brown

1

1 reference

31 July 2017

Nathan Boley

2

1 reference

31 July 2017

Robert Eisman

3

1 reference

31 July 2017

Gemma E May

4

1 reference

31 July 2017

Marcus H Stoiber

5

1 reference

31 July 2017

Michael O Duff

6

1 reference

31 July 2017

Ben W Booth

7

1 reference

31 July 2017

Soo Park

9

1 reference

31 July 2017

Kenneth H Wan

11

1 reference

31 July 2017

Charles Yu

12

1 reference

31 July 2017

Dayu Zhang

13

1 reference

31 July 2017

Joseph W Carlson

14

1 reference

31 July 2017

Lucy Cherbas

15

1 reference

31 July 2017

Brian D Eads

16

1 reference

31 July 2017

Keithanne Mockaitis

18

1 reference

31 July 2017

Johnny Roberts

19

1 reference

31 July 2017

Carrie A Davis

20

1 reference

31 July 2017

Erwin Frise

21

1 reference

31 July 2017

Ann S Hammonds

22

1 reference

31 July 2017

Sara Olson

23

1 reference

31 July 2017

Sol Shenker

24

1 reference

31 July 2017

Richard Weiszmann

27

1 reference

31 July 2017

Garret Robinson

28

1 reference

31 July 2017

Juan Hernandez

29

1 reference

31 July 2017

Peter Cherbas

33

1 reference

31 July 2017

Roger A Hoskins

35

1 reference

31 July 2017

Thomas C Kaufman

36

1 reference

31 July 2017

Brian Oliver

38

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 August 2014

1 reference

31 July 2017

1 reference

31 July 2017

volume

512

1 reference

31 July 2017

issue

7515

1 reference

31 July 2017

page(s)

393-399

1 reference

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Activity-dependent human brain coding/noncoding gene regulatory networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

GENCODE: the reference human genome annotation for The ENCODE Project

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Long noncoding RNAs are rarely translated in two human cell lines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Landscape of transcription in human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Global patterns of tissue-specific alternative polyadenylation in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The developmental transcriptome of Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The transcriptional diversity of 25 Drosophila cell lines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Analysis and design of RNA sequencing experiments for identifying isoform regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Differential expression analysis for sequence count data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The landscape of C. elegans 3'UTRs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Sex-specific splicing in Drosophila: widespread occurrence, tissue specificity and evolutionary conservation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Reactome knowledgebase of human biological pathways and processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Endogenous small interfering RNAs in animals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

An endogenous small interfering RNA pathway in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The transcriptional landscape of the yeast genome defined by RNA sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Transcriptome response to heavy metal stress in Drosophila reveals a new zinc transporter that confers resistance to zinc

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Complex Loci in human and mouse genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Antisense transcription in the mammalian transcriptome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The Drosophila melanogaster genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Control of distal antennal identity and tarsal development in Drosophila by spineless-aristapedia, a homolog of the mammalian dioxin receptor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12962

Novel transcripts from the Ultrabithorax domain of the bithorax complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12962

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12962

Analysis of cubitus interruptus regulation in Drosophila embryos and imaginal disks

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4152413

Genome-guided transcript assembly by integrative analysis of RNA sequence data.

28 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE12962

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE12962

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference

31 July 2017

1 reference