Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. (Q34138823)

31 July 2017

title

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. (English)

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David Haussler

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Junchen Gu

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Mattia Pelizzola

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Ryan Lister

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Alexander Meissner

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object named as

Alexander Meissner

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Andreas Gnirke

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Bradley E Bernstein

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R Alan Harris

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ORCID Public Data File 2021

Aleksandar Milosavljevic

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Aleksandar Milosavljevic

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Ting Wang

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Cristian Coarfa

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Raman P Nagarajan

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Chibo Hong

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Sara L Downey

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Brett E Johnson

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Shaun D Fouse

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Allen Delaney

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Yongjun Zhao

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Adam Olshen

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Tracy Ballinger

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Xin Zhou

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Kevin J Forsberg

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Lorigail Echipare

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Henriette O'Geen

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Yuanxin Xi

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Charles B Epstein

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R David Hawkins

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Bing Ren

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Wen-Yu Chung

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Hongcang Gu

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Michael Q Zhang

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Joseph R Ecker

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Wei Li

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Robert A Waterland

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Marco A Marra

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Martin Hirst

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Joseph F Costello

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31 July 2017

language of work or name

English

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publication date

19 September 2010

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31 July 2017

volume

28

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issue

10

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31 July 2017

page(s)

1097-1105

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Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Conserved role of intragenic DNA methylation in regulating alternative promoters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Whole genome DNA methylation analysis based on high throughput sequencing technology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Allelic skewing of DNA methylation is widespread across the genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Transposable elements in gene regulation and in the evolution of vertebrate genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Human DNA methylomes at base resolution show widespread epigenomic differences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Updates to the RMAP short-read mapping software

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Clone- and gene-specific aberrations of parental imprinting in human induced pluripotent stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

BSMAP: whole genome bisulfite sequence MAPping program

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

High-throughput bisulfite sequencing in mammalian genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

ZOOM! Zillions of oligos mapped

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Genome-scale DNA methylation maps of pluripotent and differentiated cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Methyl-DNA immunoprecipitation (MeDIP): hunting down the DNA methylome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Gene body-specific methylation on the active X chromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Feeder-independent culture of human embryonic stem cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Analysis of allelic differential expression in human white blood cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

DNA methylation and human disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Transposable elements: targets for early nutritional effects on epigenetic gene regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Conserved methylation imprints in the human and mouse GRB10 genes with divergent allelic expression suggests differential reading of the same mark

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

DNA methylation patterns and epigenetic memory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Bisulfite genomic sequencing: systematic investigation of critical experimental parameters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Hypomethylation distinguishes genes of some human cancers from their normal counterparts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Tissue-specific differences in DNA methylation in various mammals

5 July 2018

1 reference

Moving AHEAD with an international human epigenome project.

21 January 2018

1 reference

Transposable elements have rewired the core regulatory network of human embryonic stem cells

21 January 2018

1 reference

A genome-wide approach to identifying novel-imprinted genes.

21 January 2018

1 reference

Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming

21 January 2018

1 reference

Neomorphic agouti mutations in obese yellow mice

21 January 2018

1 reference

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

21 January 2018

1 reference

Post-weaning diet affects genomic imprinting at the insulin-like growth factor 2 (Igf2) locus

21 January 2018

1 reference

Optimizing annealing temperature overcomes bias in bisulfite PCR methylation analysis.

21 January 2018

1 reference

Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2955169

Using ChIP-seq technology to identify targets of zinc finger transcription factors

28 October 2018

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.1682

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Dimensions Publication ID

31 July 2017

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31 July 2017

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