Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis (Q34133645)

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English	Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

31 July 2017

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis (English)

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Europe PubMed Central

PubMed publication ID

31 July 2017

data extraction

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inferred from title

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Pedro Navarro

2

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Ludovic C Gillet

object named as

Ludovic C Gillet

1

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Hannes L. Röst

object named as

Hannes Röst

4

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object named as

Stephen Tate

3

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Ruedi Aebersold

8

object named as

Ruedi Aebersold

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Europe PubMed Central

PubMed publication ID

31 July 2017

author name string

Nathalie Selevsek

5

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Europe PubMed Central

PubMed publication ID

31 July 2017

Lukas Reiter

6

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Europe PubMed Central

PubMed publication ID

31 July 2017

Ron Bonner

7

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Europe PubMed Central

PubMed publication ID

31 July 2017

publication date

18 January 2012

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Europe PubMed Central

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31 July 2017

Molecular & Cellular Proteomics

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Europe PubMed Central

PubMed publication ID

31 July 2017

11

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Europe PubMed Central

PubMed publication ID

31 July 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

O111.016717

1 reference

Europe PubMed Central

PubMed publication ID

31 July 2017

A computational tool to detect and avoid redundancy in selected reaction monitoring

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433915

28 July 2018

Software for quantitative proteomic analysis using stable isotope labeling and data independent acquisition

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28 July 2018

Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600).

1 reference

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28 July 2018

mProphet: automated data processing and statistical validation for large-scale SRM experiments

1 reference

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28 July 2018

Faster, quantitative, and accurate precursor acquisition independent from ion count

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3433915

28 July 2018

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

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Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics

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Advances in mass spectrometry for lipidomics

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Options and considerations when selecting a quantitative proteomics strategy

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28 July 2018

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation

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28 July 2018

Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation

1 reference

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

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XDIA: improving on the label-free data-independent analysis

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Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry

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Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

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ETISEQ--an algorithm for automated elution time ion sequencing of concurrently fragmented peptides for mass spectrometry-based proteomics

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28 July 2018

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

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28 July 2018

Unique ion signature mass spectrometry, a deterministic method to assign peptide identity.

1 reference

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28 July 2018

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

1 reference

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28 July 2018

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

1 reference

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28 July 2018

Quantifying proteins by mass spectrometry: the selectivity of SRM is only part of the problem

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Quantitative interaction proteomics using mass spectrometry

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A database of mass spectrometric assays for the yeast proteome

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Selected reaction monitoring for quantitative proteomics: a tutorial

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Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

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Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

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ESI-MS/MS library of 1,253 compounds for application in forensic and clinical toxicology

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How specific is my SRM?: The issue of precursor and product ion redundancy

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Overview of tandem mass spectrometry (MS/MS) database search algorithms

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Europe PubMed Central

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31 July 2017

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