Defining the human microbiome (Q34365385)

1 August 2017

title

Defining the human microbiome (English)

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1 August 2017

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4

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1 August 2017

Laura Wegener Parfrey

series ordinal

3

object named as

Laura Wegener Parfrey

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1 August 2017

2

Jessica L Metcalf

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1 August 2017

Luke K Ursell

1

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1 August 2017

publication date

1 August 2012

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1 August 2017

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1 August 2017

volume

70 Suppl 1

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1 August 2017

page(s)

S38-44

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Experimental and analytical tools for studying the human microbiome

1 August 2017

cites work

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Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

6 July 2018

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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

6 July 2018

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Development of the human gastrointestinal microbiota and insights from high-throughput sequencing

6 July 2018

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6 July 2018

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Enterotypes of the human gut microbiome

6 July 2018

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6 July 2018

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Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

6 July 2018

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Supervised classification of human microbiota

6 July 2018

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Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

6 July 2018

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Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

6 July 2018

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6 July 2018

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Reshaping the gut microbiome with bacterial transplantation and antibiotic intake

6 July 2018

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Durable alteration of the colonic microbiota by the administration of donor fecal flora

6 July 2018

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Succession of microbial consortia in the developing infant gut microbiome

6 July 2018

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Creating and characterizing communities of human gut microbes in gnotobiotic mice

6 July 2018

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Prokaryotic and eukaryotic diversity of the human gut.

6 July 2018

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Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

6 July 2018

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Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences

6 July 2018

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Vaginal microbiome of reproductive-age women

6 July 2018

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Direct sequencing of the human microbiome readily reveals community differences

6 July 2018

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QIIME allows analysis of high-throughput community sequencing data

6 July 2018

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Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

6 July 2018

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The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

6 July 2018

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Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

6 July 2018

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

6 July 2018

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Forensic identification using skin bacterial communities

6 July 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

6 July 2018

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Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

6 July 2018

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Success of self-administered home fecal transplantation for chronic Clostridium difficile infection

6 July 2018

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Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea

6 July 2018

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6 July 2018

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Bacterial community variation in human body habitats across space and time

6 July 2018

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The NIH Human Microbiome Project

6 July 2018

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

6 July 2018

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Identifying genetic determinants needed to establish a human gut symbiont in its habitat

6 July 2018

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Faecal transplant for recurrent Clostridium difficile-associated diarrhoea: a UK case series

6 July 2018

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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

6 July 2018

1 reference

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Accurate determination of microbial diversity from 454 pyrosequencing data

6 July 2018

1 reference

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

6 July 2018

1 reference

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Statistical methods for detecting differentially abundant features in clinical metagenomic samples

6 July 2018

1 reference

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A core gut microbiome in obese and lean twins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426293

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426293

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

6 July 2018

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The influence of sex, handedness, and washing on the diversity of hand surface bacteria

6 July 2018

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The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

6 July 2018

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Worlds within worlds: evolution of the vertebrate gut microbiota

6 July 2018

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Viral diversity and dynamics in an infant gut.

6 July 2018

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Evolution of mammals and their gut microbes

6 July 2018

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The complete genome of an individual by massively parallel DNA sequencing

6 July 2018

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Functional metagenomic profiling of nine biomes

6 July 2018

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The human microbiome project

6 July 2018

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Development of the human infant intestinal microbiota

6 July 2018

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Global patterns in bacterial diversity

6 July 2018

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An obesity-associated gut microbiome with increased capacity for energy harvest

6 July 2018

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Microbial ecology: human gut microbes associated with obesity

6 July 2018

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UniFrac: a new phylogenetic method for comparing microbial communities

6 July 2018

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Obesity alters gut microbial ecology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3426293

Comparative metagenomics of microbial communities

6 July 2018

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Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism

6 July 2018

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The gut microbiota as an environmental factor that regulates fat storage

6 July 2018

1 reference

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Finishing the euchromatic sequence of the human genome

6 July 2018

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Developmental microbial ecology of the neonatal gastrointestinal tract

6 July 2018

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A molecular view of microbial diversity and the biosphere

6 July 2018

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An Abstract of a Letter from Mr. Anthony Leewenhoeck at Delft, Dated Sep. 17. 1683. Containing Some Microscopical Observations, about Animals in the Scurf of the Teeth, the Substance Call'd Worms in the Nose, the Cuticula Consisting of Scales

6 July 2018

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Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

21 January 2018

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Colonoscopic fecal bacteriotherapy in the treatment of recurrent Clostridium difficile infection--results and follow-up

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Results of faecal donor instillation therapy for recurrent Clostridium difficile-associated diarrhoea

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Bacteriotherapy for chronic relapsing Clostridium difficile diarrhoea in six patients

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Successful treatment of fulminant Clostridium difficile infection with fecal bacteriotherapy

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Identifiers

DOI

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1 August 2017

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1 August 2017

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