Identifying the hotspots on the top faces of WD40-repeat proteins from their primary sequences by β-bulges and DHSW tetrads (Q34391209)

1 August 2017

title

Identifying the hotspots on the top faces of WD40-repeat proteins from their primary sequences by β-bulges and DHSW tetrads (English)

1 reference

1 August 2017

Xian-Hui Wu

1

1 reference

1 August 2017

Yang Wang

2

1 reference

1 August 2017

Zhu Zhuo

3

1 reference

1 August 2017

Fan Jiang

4

1 reference

1 August 2017

Yun-Dong Wu

5

1 reference

1 August 2017

language of work or name

English

0 references

publication date

15 August 2012

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1 August 2017

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1 August 2017

volume

7

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1 August 2017

issue

8

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1 August 2017

page(s)

e43005

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Creative Commons Attribution 4.0 International

1 August 2017

copyright license

start time

15 August 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 July 2018

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6 July 2018

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Inhibition of cortical neuron differentiation by Groucho/TLE1 requires interaction with WRPW, but not Eh1, repressor peptides.

6 July 2018

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6 July 2018

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Structure of the yeast WD40 domain protein Cia1, a component acting late in iron-sulfur protein biogenesis

6 July 2018

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6 July 2018

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Structure of a Fbw7-Skp1-cyclin E complex: multisite-phosphorylated substrate recognition by SCF ubiquitin ligases

6 July 2018

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Structural analysis of Bub3 interactions in the mitotic spindle checkpoint

6 July 2018

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DDB1 functions as a linker to recruit receptor WD40 proteins to CUL4-ROC1 ubiquitin ligases

6 July 2018

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CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation

6 July 2018

1 reference

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A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1

6 July 2018

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Molecular recognition of histone H3 by the WD40 protein WDR5.

6 July 2018

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The structure of Sif2p, a WD repeat protein functioning in the SET3 corepressor complex

6 July 2018

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Reconstruction of the conserved beta-bulge in mammalian defensins using D-amino acids.

6 July 2018

1 reference

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Identification of residues in the WD-40 repeat motif of the F-box protein Met30p required for interaction with its substrate Met4p

6 July 2018

1 reference

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Coupling PAF signaling to dynein regulation: structure of LIS1 in complex with PAF-acetylhydrolase

6 July 2018

1 reference

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Crystal structure of the spindle assembly checkpoint protein Bub3

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Crystal structure of Ski8p, a WD-repeat protein with dual roles in mRNA metabolism and meiotic recombination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression

6 July 2018

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The WD-repeats of Net2p interact with Dnm1p and Fis1p to regulate division of mitochondria

6 July 2018

1 reference

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Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase

6 July 2018

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Keeping G proteins at bay: a complex between G protein-coupled receptor kinase 2 and Gbetagamma

6 July 2018

1 reference

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Structural basis for phosphodependent substrate selection and orientation by the SCFCdc4 ubiquitin ligase

6 July 2018

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Crystal structure of the C-terminal WD40 repeat domain of the human Groucho/TLE1 transcriptional corepressor

6 July 2018

1 reference

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Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation

6 July 2018

1 reference

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Unraveling hot spots in binding interfaces: progress and challenges

6 July 2018

1 reference

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The role of a beta-bulge in the folding of the beta-hairpin structure in ubiquitin

6 July 2018

1 reference

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Identification of a structural motif that confers specific interaction with the WD40 repeat domain of Arabidopsis COP1.

6 July 2018

1 reference

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Regulation of chromatin structure by site-specific histone H3 methyltransferases

6 July 2018

1 reference

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Structure of the C-terminal domain of Tup1, a corepressor of transcription in yeast

6 July 2018

1 reference

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Beta propellers: structural rigidity and functional diversity

6 July 2018

1 reference

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6 July 2018

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6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The WD repeat: a common architecture for diverse functions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

An irregular beta-bulge common to a group of bacterial RNases is an important determinant of stability and function in barnase.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The atomic structure of protein-protein recognition sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Anatomy of hot spots in protein interfaces

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Residues in the WD repeats of Tup1 required for interaction with alpha2.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Apaf-1, a human protein homologous to C. elegans CED-4, participates in cytochrome c-dependent activation of caspase-3

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Effects of insertions and deletions in a beta-bulge region of Escherichia coli dihydrofolate reductase.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Crystal structure at 2.4 angstroms resolution of the complex of transducin betagamma and its regulator, phosducin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Crystal structure of a G-protein beta gamma dimer at 2.1A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The 2.0 A crystal structure of a heterotrimeric G protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Identification, classification, and analysis of beta-bulges in proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The ancient regulatory-protein family of WD-repeat proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The beta bulge: a common small unit of nonrepetitive protein structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Is Asp-His-Ser/Thr-Trp tetrad hydrogen-bond network important to WD40-repeat proteins: a statistical and theoretical study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Glutamate64 to glycine substitution in G1 beta-bulge of ubiquitin impairs function and stabilizes structure of the protein.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

Coupling PAF Signaling to Dynein Regulation

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3419727

The Schizosaccharomyces pombe corepressor Tup11 interacts with the iron-responsive transcription factor Fep1

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22916195

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular Recognition of Transcriptional Repressor Motifs by the WD Domain of the Groucho/TLE Corepressor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22916195

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The central coiled-coil domain and carboxyl-terminal WD-repeat domain of Arabidopsis SPA1 are responsible for mediating repression of light signaling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22916195

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0043005

1 reference

1 August 2017

0 references

1 reference

1 August 2017

1 reference