Translocation thermodynamics of linear and cyclic nonaarginine into model DPPC bilayer via coarse-grained molecular dynamics simulation: implications of pore formation and nonadditivity. (Q34403034)

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English	Translocation thermodynamics of linear and cyclic nonaarginine into model DPPC bilayer via coarse-grained molecular dynamics simulation: implications of pore formation and nonadditivity.	scientific article

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7 March 2020

Translocation thermodynamics of linear and cyclic nonaarginine into model DPPC bilayer via coarse-grained molecular dynamics simulation: implications of pore formation and nonadditivity (English)

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7 March 2020

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7 March 2020

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Xiaorong Liu

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7 March 2020

Sudipta Kumar Sinha

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7 March 2020

Sandeep Patel

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26 February 2014

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7 March 2020

Journal of Physical Chemistry B

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7 March 2020

118

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7 March 2020

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7 March 2020

2670-2682

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7 March 2020

Using the Wimley-White Hydrophobicity Scale as a Direct Quantitative Test of Force Fields: The MARTINI Coarse-Grained Model

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Improved Parameters for the Martini Coarse-Grained Protein Force Field.

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6 July 2018

Accelerating Convergence in Molecular Dynamics Simulations of Solutes in Lipid Membranes by Conducting a Random Walk along the Bilayer Normal

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Free energetics of arginine permeation into model DMPC lipid bilayers: coupling of effective counterion concentration and lateral bilayer dimensions

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Direct translocation of cell-penetrating peptides in liposomes: a combined mass spectrometry quantification and fluorescence detection study

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6 July 2018

Free energy of translocating an arginine-rich cell-penetrating peptide across a lipid bilayer suggests pore formation

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Transient focal membrane deformation induced by arginine-rich peptides leads to their direct penetration into cells.

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Short peptides as biosensor transducers

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The role of membrane thickness in charged protein-lipid interactions.

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Backbone rigidity and static presentation of guanidinium groups increases cellular uptake of arginine-rich cell-penetrating peptides

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Spontaneous membrane-translocating peptides by orthogonal high-throughput screening

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6 July 2018

Physicochemical mechanism for the enhanced ability of lipid membrane penetration of polyarginine

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Polarizable water model for the coarse-grained MARTINI force field

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Water-protein interactions of an arginine-rich membrane peptide in lipid bilayers investigated by solid-state nuclear magnetic resonance spectroscopy

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Translocation and endocytosis for cell-penetrating peptide internalization

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6 July 2018

Arginine-rich peptides destabilize the plasma membrane, consistent with a pore formation translocation mechanism of cell-penetrating peptides

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Alternative mechanisms for the interaction of the cell-penetrating peptides penetratin and the TAT peptide with lipid bilayers

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Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes

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On the thermodynamic stability of a charged arginine side chain in a transmembrane helix

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Effects of cargo molecules on the cellular uptake of arginine-rich cell-penetrating peptides

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A brief introduction to cell-penetrating peptides

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