Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain (Q34471336)

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English	Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

2 August 2017

Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain (English)

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Europe PubMed Central

PubMed publication ID

2 August 2017

Pramit Kumar Chowdhury

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Pramit Chowdhury

3

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Julie M Glasscock

1

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Europe PubMed Central

PubMed publication ID

2 August 2017

Yongjin Zhu

2

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Europe PubMed Central

PubMed publication ID

2 August 2017

Jia Tang

4

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Europe PubMed Central

PubMed publication ID

2 August 2017

Feng Gai

5

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Europe PubMed Central

PubMed publication ID

2 August 2017

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publication date

25 September 2008

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Europe PubMed Central

PubMed publication ID

2 August 2017

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Europe PubMed Central

PubMed publication ID

2 August 2017

47

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Europe PubMed Central

PubMed publication ID

2 August 2017

42

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

11070-11076

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Folding of a LysM domain: entropy-enthalpy compensation in the transition state of an ideal two-state folder

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Toward quantification of protein backbone-backbone hydrogen bonding energies: An energetic analysis of an amide-to-ester mutation in an alpha-helix within a protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

LysM, a widely distributed protein motif for binding to (peptido)glycans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Protein folding studied by single-molecule FRET.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Two-stage folding of HP-35 from ab initio simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

A genetically encoded infrared probe.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Materials for fluorescence resonance energy transfer analysis: beyond traditional donor-acceptor combinations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

The unfolded state of the villin headpiece helical subdomain: computational studies of the role of locally stabilized structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Identification of the PXW sequence as a structural gatekeeper of the headpiece C-terminal subdomain fold

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Probing protein folding and conformational transitions with fluorescence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Understanding the mechanism of beta-hairpin folding via phi-value analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Probing site-specific conformational distributions in protein folding with solid-state NMR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Solution structures of the C-terminal headpiece subdomains of human villin and advillin, evaluation of headpiece F-actin-binding requirements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Experimental tests of villin subdomain folding simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

The role of aromatic residues in the hydrophobic core of the villin headpiece subdomain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

The structure of a LysM domain from E. coli membrane-bound lytic murein transglycosylase D (MltD)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

The early stage of folding of villin headpiece subdomain observed in a 200-nanosecond fully solvated molecular dynamics simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Donor-donor energy migration for determining intramolecular distances in proteins: I. Application of a model to the latent plasminogen activator inhibitor-1 (PAI-1).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

NMR structure of the 35-residue villin headpiece subdomain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, alpha-chymotrypsin, and beta-lactoglobulin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

6 July 2018

Role of helix nucleation in the kinetics of binding of mastoparan X to phospholipid bilayers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Use of the novel fluorescent amino acid p-cyanophenylalanine offers a direct probe of hydrophobic core formation during the folding of the N-terminal domain of the ribosomal protein L9 and provides evidence for two-state folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Site-specific hydration status of an amphipathic peptide in AOT reverse micelles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Conformational distribution of a 14-residue peptide in solution: a fluorescence resonance energy transfer study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Probing the kinetics of membrane-mediated helix folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Global optimization and folding pathways of selected alpha-helical proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Folding of the villin headpiece subdomain from random structures. Analysis of the charge distribution as a function of pH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Peptide models provide evidence for significant structure in the denatured state of a rapidly folding protein: the villin headpiece subdomain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Parallel tempering simulations of HP-36.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Using nitrile-derivatized amino acids as infrared probes of local environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Application of the diffusion-collision model to the folding of three-helix bundle proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4224107

27 October 2018

Understanding the folding mechanism of an alpha-helical hairpin

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic NMR Line-Shape Analysis Demonstrates that the Villin Headpiece Subdomain Folds on the Microsecond Time Scale

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A thermostable 35-residue subdomain within villin headpiece

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Residue Specific Resolution of Protein Folding Dynamics Using Isotope-Edited Infrared Temperature Jump Spectroscopy†

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coupling between hydration layer dynamics and unfolding kinetics of HP-36

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ab initio folding of helix bundle proteins using molecular dynamics simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

All-atom fast protein folding simulations: the villin headpiece

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel fluorescent probe for protein binding and folding studies: p-cyano-phenylalanine

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Free-Energy Landscape of the Villin Headpiece in an All-Atom Force Field

1 reference

https://pubmed.ncbi.nlm.nih.gov/18816063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI8012406

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

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