Is there a code for protein-DNA recognition? Probab(ilistical)ly. . . (Q34631771)

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8 November 2019

review article

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title

Is there a code for protein-DNA recognition? Probab(ilistical)ly. . . (English)

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8 November 2019

1

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8 November 2019

author name string

Alan S Lapedes

series ordinal

2

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8 November 2019

Gary D Stormo

series ordinal

3

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8 November 2019

language of work or name

English

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publication date

1 May 2002

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8 November 2019

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8 November 2019

volume

24

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8 November 2019

issue

5

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8 November 2019

page(s)

466-475

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Sequence-specific recognition of double helical nucleic acids by proteins

8 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Structure of the cro repressor from bacteriophage lambda and its interaction with DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Structure of catabolite gene activator protein at 2.9 A resolution suggests binding to left-handed B-DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

The operator-binding domain of lambda repressor: structure and DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

21 January 2018

Protein-DNA recognition

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Protein-DNA interaction. No code for recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Base sequence discrimination by zinc-finger DNA-binding domains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Toward rules relating zinc finger protein sequences and DNA binding site preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

DNA recognition by Cys2His2 zinc finger proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Selection of DNA binding sites by regulatory proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Search algorithm for pattern match analysis of nuleic add sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Computer methods to locate signals in nucleic acid sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Consensus patterns in DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Identifying protein-binding sites from unaligned DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

DNA recognition code of transcription factors in the helix-turn-helix, probe helix, hormone receptor, and zinc finger families

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

DNA recognition code of transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Quantitative specificity of the Mnt repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Quantitative analysis of the relationship between nucleotide sequence and functional activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Length-encoded multiplex binding site determination: application to zinc finger proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073

Physical basis of a protein-DNA recognition code

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.10073