Exploring the role of hydration and confinement in the aggregation of amyloidogenic peptides Aβ(16-22) and Sup35(7-13) in AOT reverse micelles (Q34642775)

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English	Exploring the role of hydration and confinement in the aggregation of amyloidogenic peptides Aβ(16-22) and Sup35(7-13) in AOT reverse micelles	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Exploring the role of hydration and confinement in the aggregation of amyloidogenic peptides Aβ(16-22) and Sup35(7-13) in AOT reverse micelles (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

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author name string

Anna Victoria Martinez

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Edyta Małolepsza

2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Eva Rivera

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Qing Lu

4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

John E Straub

5

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Europe PubMed Central

PubMed publication ID

3 August 2017

language of work or name

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publication date

1 December 2014

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Europe PubMed Central

PubMed publication ID

3 August 2017

Journal of Chemical Physics

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Europe PubMed Central

PubMed publication ID

3 August 2017

141

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

22

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

22D530

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Simulations of Protein Aggregation: Insights from Atomistic and Coarse-Grained Models

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7 July 2018

Role of Charge and Solvation in the Structure and Dynamics of Alanine-Rich Peptide AKA2 in AOT Reverse Micelles

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7 July 2018

All-atom empirical potential for molecular modeling and dynamics studies of proteins

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7 July 2018

Empirical maps for the calculation of amide I vibrational spectra of proteins from classical molecular dynamics simulations

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7 July 2018

A kinetic approach to the sequence-aggregation relationship in disease-related protein assembly

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7 July 2018

Probing the structure and dynamics of confined water in AOT reverse micelles

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7 July 2018

Kinetics of amyloid aggregation: a study of the GNNQQNY prion sequence

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7 July 2018

Spontaneous formation of twisted Aβ(16-22) fibrils in large-scale molecular-dynamics simulations

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7 July 2018

Role of water in protein aggregation and amyloid polymorphism

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7 July 2018

A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide GNNQQNY from the yeast prion sup-35

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7 July 2018

MDAnalysis: a toolkit for the analysis of molecular dynamics simulations

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7 July 2018

Protein folding in a reverse micelle environment: the role of confinement and dehydration

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7 July 2018

Toward a molecular theory of early and late events in monomer to amyloid fibril formation

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7 July 2018

Analysis of water in confined geometries and at interfaces

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7 July 2018

Polymorphism in Alzheimer Abeta amyloid organization reflects conformational selection in a rugged energy landscape

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7 July 2018

GNNQQNY--investigation of early steps during amyloid formation

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7 July 2018

Principles governing oligomer formation in amyloidogenic peptides

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7 July 2018

Water dynamics at neutral and ionic interfaces

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7 July 2018

Sequence and crowding effects in the aggregation of a 10-residue fragment derived from islet amyloid polypeptide

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7 July 2018

An alpha-helical peptide in AOT micelles prefers to be localized at the water/headgroup interface

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4257974

7 July 2018

Effect of dehydration on the aggregation kinetics of two amyloid peptides

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7 July 2018

Structural studies of the transmembrane C-terminal domain of the amyloid precursor protein (APP): does APP function as a cholesterol sensor?

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7 July 2018

Role of water in mediating the assembly of Alzheimer amyloid-beta Abeta16-22 protofilaments

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7 July 2018

Are current molecular dynamics force fields too helical?

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7 July 2018

Soluble protein oligomers in neurodegeneration: lessons from the Alzheimer's amyloid beta-peptide

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7 July 2018

Monomer adds to preformed structured oligomers of Abeta-peptides by a two-stage dock-lock mechanism.

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7 July 2018

Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach

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7 July 2018

Protein misfolding, functional amyloid, and human disease

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7 July 2018

Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.

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7 July 2018

Exploring the early steps of amyloid peptide aggregation by computers

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7 July 2018

Scalable molecular dynamics with NAMD

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7 July 2018

Probing the initial stage of aggregation of the Abeta(10-35)-protein: assessing the propensity for peptide dimerization

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7 July 2018

A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6

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7 July 2018

The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35

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7 July 2018

What vibrations tell us about proteins.

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7 July 2018

Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects

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7 July 2018

A portrait of Alzheimer secretases--new features and familiar faces

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7 July 2018

An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated beta-sheet structure for amyloid

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7 July 2018

Simulation study of the structure and dynamics of the Alzheimer's amyloid peptide congener in solution

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7 July 2018

Alzheimer's disease amyloid propagation by a template-dependent dock-lock mechanism

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VMD: visual molecular dynamics

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Transition-state analogue inhibitors of gamma-secretase bind directly to presenilin-1.

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Atomic-level description of amyloid beta-dimer formation

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The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent.

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Dissecting the assembly of Abeta16-22 amyloid peptides into antiparallel beta sheets.

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21 January 2018

Thermodynamic analysis of structural transitions during GNNQQNY aggregation

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Neuropathology: Alzheimer's in real time.

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Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing

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21 January 2018

Structure, stability, and hydration of a polypeptide in AOT reverse micelles

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Pathway complexity of Alzheimer's beta-amyloid Abeta16-22 peptide assembly

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Vibrational spectroscopy and dynamics of water confined inside reverse micelles

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21 January 2018

Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR

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Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent

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In Silico Assembly of Alzheimer's Aβ16-22Peptide into β-Sheets

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Reorientation dynamics of nanoconfined water: power-law decay, hydrogen-bond jumps, and test of a two-state model

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based on heuristic

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Replica exchange molecular dynamics simulations of amyloid peptide aggregation

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12 December 2020

based on heuristic

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Membrane-Protein Interactions Are Key to Understanding Amyloid Formation

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https://pubmed.ncbi.nlm.nih.gov/25494801

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamics and Kinetics of Aggregation for the GNNQQNY Peptide

1 reference

https://pubmed.ncbi.nlm.nih.gov/25494801

12 December 2020

based on heuristic

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Infrared study of the effect of hydration on the amide I band and aggregation properties of helical peptides

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https://pubmed.ncbi.nlm.nih.gov/25494801

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tuning the cooperativity of the helix-coil transition by aqueous reverse micelles

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https://pubmed.ncbi.nlm.nih.gov/25494801

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1063/1.4902550

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

ResearchGate publication ID

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