Comparison of the complete protein sets of worm and yeast: orthology and divergence (Q34670114)

3 August 2017

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title

Comparison of the complete protein sets of worm and yeast: orthology and divergence (English)

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3 August 2017

3

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5

E V Koonin

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2

L Aravind

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David Botstein

13

object named as

D Botstein

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6

S S Dwight

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12

J M Cherry

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M A Harris

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S A Chervitz

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C A Ball

4

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K Dolinski

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S Mohr

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T Smith

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S Weng

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3 August 2017

language of work or name

English

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publication date

1 December 1998

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3 August 2017

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3 August 2017

volume

282

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3 August 2017

issue

5396

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3 August 2017

page(s)

2022-2028

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Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

3 August 2017

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7 July 2018

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7 July 2018

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The Caenorhabditis elegans SH2 domain-containing protein tyrosine phosphatase PTP-2 participates in signal transduction during oogenesis and vulval development

7 July 2018

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Identification of a novel nuclear speckle-type protein, SPOP

7 July 2018

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A genomic perspective on protein families

7 July 2018

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Gene families: the taxonomy of protein paralogs and chimeras

7 July 2018

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Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

7 July 2018

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7 July 2018

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Crystal structure of a Hedgehog autoprocessing domain: homology between Hedgehog and self-splicing proteins

7 July 2018

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7 July 2018

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7 July 2018

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Yeast as a model organism

7 July 2018

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Cytoplasmic signalling domains: the next generation

7 July 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

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Genetic and physical maps of Saccharomyces cerevisiae

7 July 2018

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Ras is required for a limited number of cell fates and not for general proliferation in Caenorhabditis elegans

7 July 2018

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At the heart of the budding yeast cell cycle

7 July 2018

1 reference

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7 July 2018

1 reference

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Local alignment statistics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

7 July 2018

1 reference

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Using CLUSTAL for multiple sequence alignments

7 July 2018

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Hedgehog patterning activity: role of a lipophilic modification mediated by the carboxy-terminal autoprocessing domain

7 July 2018

1 reference

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A Caenorhabditis elegans RNA polymerase II gene, ama-1 IV, and nearby essential genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Determining divergence times of the major kingdoms of living organisms with a protein clock

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Identification of protein coding regions by database similarity search

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Applications and statistics for multiple high-scoring segments in molecular sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Genetics of eukaryotic RNA polymerases I, II, and III

7 July 2018

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Mobile Minos elements from Drosophila hydei encode a two-exon transposase with similarity to the paired DNA-binding domain

7 July 2018

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 July 2018

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The lin-3/let-23 pathway mediates inductive signalling during male spicule development in Caenorhabditis elegans

7 July 2018

1 reference

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The multiplicity of domains in proteins

7 July 2018

1 reference

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Isolation and genetic characterization of cell-lineage mutants of the nematode Caenorhabditis elegans

7 July 2018

1 reference

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Regulation and cell autonomy during postembryonic development of Caenorhabditis elegans

7 July 2018

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Dominant X-chromosome nondisjunction mutants of Caenorhabditis elegans.

7 July 2018

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Distinguishing Homologous from Analogous Proteins

7 July 2018

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Transcriptional regulation in the yeast life cycle

7 July 2018

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The nematode Caenorhabditis elegans

7 July 2018

1 reference

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Yeast: an experimental organism for modern biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

From membrane to nucleus: the pathway of signal transduction in yeast and its genetic control

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Life cycle of the budding yeast Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Functional homology of mammalian and yeast RAS genes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

S. cerevisiae encodes an essential protein homologous in sequence and function to mammalian BiP.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

The HSP70 multigene family of Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Genetic control of cell type and pattern formation in Caenorhabditis elegans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Signal transduction during pheromone response in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

The translation machinery and 70 kd heat shock protein cooperate in protein synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Centractin is an actin homologue associated with the centrosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

POU domain family values: flexibility, partnerships, and developmental codes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

A Ras-mediated signal transduction pathway is involved in the control of sex myoblast migration in Caenorhabditis elegans

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Ancient conserved regions in new gene sequences and the protein databases

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

The identification of a Caenorhabditis elegans homolog of p34cdc2 kinase.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

The mitochondrial ribosomal RNA genes of the nematodes Caenorhabditis elegans and Ascaris suum: consensus secondary-structure models and conserved nucleotide sets for phylogenetic analysis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3057080

Three genes of the MAP kinase cascade, mek-2, mpk-1/sur-1 and let-60 ras, are required for meiotic cell cycle progression in Caenorhabditis elegans

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9851918

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Zinc Fingers in Caenorhabditis elegans: Finding Families and Probing Pathways

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9851918

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.282.5396.2022

1 reference

3 August 2017

1 reference

3 August 2017

1 reference