RBP16 stimulates trypanosome RNA editing in vitro at an early step in the editing reaction. (Q34702943)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16691000%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

RBP16 stimulates trypanosome RNA editing in vitro at an early step in the editing reaction (English)

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21 January 2020

3

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21 January 2020

author name string

Melissa M Miller

series ordinal

1

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21 January 2020

Kari Halbig

series ordinal

2

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21 January 2020

Laurie K Read

series ordinal

4

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21 January 2020

language of work or name

English

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publication date

11 May 2006

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21 January 2020

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21 January 2020

volume

12

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21 January 2020

issue

7

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21 January 2020

page(s)

1292-1303

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An essential RNase III insertion editing endonuclease in Trypanosoma brucei.

21 January 2020

cites work

1 reference

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TbMP42, a protein component of the RNA editing complex in African trypanosomes, has endo-exoribonuclease activity

7 July 2018

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Complex management: RNA editing in trypanosomes

7 July 2018

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Reconstitution of uridine-deletion precleaved RNA editing with two recombinant enzymes.

7 July 2018

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RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei

7 July 2018

1 reference

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Complete cycles of bloodstream trypanosome RNA editing in vitro

7 July 2018

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Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing

7 July 2018

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Identification of novel components of Trypanosoma brucei editosomes

7 July 2018

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Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria

7 July 2018

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A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components

7 July 2018

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Functional interaction between JC virus late regulatory agnoprotein and cellular Y-box binding transcription factor, YB-1

7 July 2018

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Positive and negative effects of the major mammalian messenger ribonucleoprotein p50 on binding of 40 S ribosomal subunits to the initiation codon of beta-globin mRNA.

7 July 2018

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RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei

7 July 2018

1 reference

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The trypanosome homolog of human p32 interacts with RBP16 and stimulates its gRNA binding activity

7 July 2018

1 reference

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Mechanism of the gBP21-mediated RNA/RNA annealing reaction: matchmaking and charge reduction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

The major mRNA-associated protein YB-1 is a potent 5' cap-dependent mRNA stabilizer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

7 July 2018

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The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

The Y-box binding protein YB-1 suppresses collagen alpha 1(I) gene transcription via an evolutionarily conserved regulatory element in the proximal promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Trypanosome RNA editing: simple guide RNA features enhance U deletion 100-fold.

7 July 2018

1 reference

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A mechanism for translationally coupled mRNA turnover: interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex

7 July 2018

1 reference

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Escherichia coli CspA-family RNA chaperones are transcription antiterminators

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

RNA-binding properties of the mitochondrial Y-box protein RBP16.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Trypanosoma brucei RBP16 is a mitochondrial Y-box family protein with guide RNA binding activity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Crystal structure of human p32, a doughnut-shaped acidic mitochondrial matrix protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

T. brucei RNA editing: adenosine nucleotides inversely affect U-deletion and U-insertion reactions at mRNA cleavage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Glomerular mesangial cell-specific transactivation of matrix metalloproteinase 2 transcription is mediated by YB-1.

7 July 2018

1 reference

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Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Trypanosome U-deletional RNA editing involves guide RNA-directed endonuclease cleavage, terminal U exonuclease, and RNA ligase activities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Masking of mRNA by Y-box proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Assembly of mitochondrial ribonucleoprotein complexes involves specific guide RNA (gRNA)-binding proteins and gRNA domains but does not require preedited mRNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Conserved structures and diversity of functions of RNA-binding proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Trypanosoma brucei mitochondrial guide RNA-mRNA chimera-forming activity cofractionates with an editing-domain-specific endonuclease and RNA ligase and is mimicked by heterologous nuclease and RNA ligase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Multiple guide RNAs for identical editing of Trypanosoma brucei apocytochrome b mRNA have an unusual minicircle location and are developmentally regulated

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Sequence-specific RNA recognition by the Xenopus Y-box proteins. An essential role for the cold shock domain.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Chimeric gRNA-mRNA molecules with oligo(U) tails covalently linked at sites of RNA editing suggest that U addition occurs by transesterification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Cultivation and in vitro cloning or procyclic culture forms of Trypanosoma brucei in a semi-defined medium. Short communication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

A deletion site editing endonuclease in Trypanosoma brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Trypanosoma brucei: functions of RBP16 cold shock and RGG domains in macromolecular interactions

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Separate insertion and deletion subcomplexes of the Trypanosoma brucei RNA editing complex.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

RBP16 is a multifunctional gene regulatory protein involved in editing and stabilization of specific mitochondrial mRNAs in Trypanosoma brucei

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484434

Ribonuclease activities of trypanosome RNA editing complex directed to cleave specifically at a chosen site

26 October 2018

1 reference

12 December 2020

Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing

1 reference

12 December 2020

The major core protein of messenger ribonucleoprotein particles (p50) promotes initiation of protein biosynthesis in vitro

1 reference

12 December 2020

Transcriptional and post-transcriptional in organello labelling of Trypanosoma brucei mitochondrial RNA

1 reference

12 December 2020

The major messenger ribonucleoprotein particle protein p50 (YB-1) promotes nucleic acid strand annealing

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2331506

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16691000%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16691000%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

16691000

1 reference