Genome-wide transcription factor binding: beyond direct target regulation (Q34744392)

4 August 2017

1 reference

title

Genome-wide transcription factor binding: beyond direct target regulation (English)

1 reference

4 August 2017

Kyle L MacQuarrie

1

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4 August 2017

Abraham P Fong

series ordinal

2

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4 August 2017

Randall H Morse

series ordinal

3

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4 August 2017

Stephen J Tapscott

series ordinal

4

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4 August 2017

publication date

4 February 2011

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4 August 2017

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4 August 2017

volume

27

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4 August 2017

issue

4

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4 August 2017

page(s)

141-148

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Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages

4 August 2017

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7 July 2018

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Regulating a master regulator: establishing tissue-specific gene expression in skeletal muscle

7 July 2018

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ChIPing the cistrome of PXR in mouse liver

7 July 2018

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Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity

7 July 2018

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Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells

7 July 2018

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Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways

7 July 2018

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Phenotypic robustness conferred by apparently redundant transcriptional enhancers

7 July 2018

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Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

7 July 2018

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Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response

7 July 2018

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Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

7 July 2018

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A beta-catenin/TCF-coordinated chromatin loop at MYC integrates 5' and 3' Wnt responsive enhancers

7 July 2018

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Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

7 July 2018

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

7 July 2018

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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

7 July 2018

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Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

7 July 2018

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Mechanisms that specify promoter nucleosome location and identity

7 July 2018

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DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

7 July 2018

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Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

7 July 2018

1 reference

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

7 July 2018

1 reference

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The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

7 July 2018

1 reference

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

7 July 2018

1 reference

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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

7 July 2018

1 reference

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

7 July 2018

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

7 July 2018

1 reference

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High-resolution profiling of histone methylations in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

A core transcriptional network for early mesoderm development in Drosophila melanogaster

7 July 2018

1 reference

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Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

7 July 2018

1 reference

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Feed-forward loop circuits as a side effect of genome evolution

7 July 2018

1 reference

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Extensive low-affinity transcriptional interactions in the yeast genome

7 July 2018

1 reference

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A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

7 July 2018

1 reference

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Myc influences global chromatin structure.

7 July 2018

1 reference

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The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation

7 July 2018

1 reference

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Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters

7 July 2018

1 reference

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The circuitry of a master switch: Myod and the regulation of skeletal muscle gene transcription

7 July 2018

1 reference

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Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Whole-genome analysis of temporal gene expression during foregut development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

A MyoD-generated feed-forward circuit temporally patterns gene expression during skeletal muscle differentiation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Convergent evolution of gene circuits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Genomic targets of the human c-Myc protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Transcriptional regulatory networks in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Ordered recruitment: gene-specific mechanism of transcription activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Network motifs in the transcriptional regulation network of Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Promoter-specific regulation of MyoD binding and signal transduction cooperate to pattern gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Regulation of organogenesis by the Caenorhabditis elegans FoxA protein PHA-4.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Chromatin remodeling enzymes: who's on first?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Molecular distinction between specification and differentiation in the myogenic basic helix-loop-helix transcription factor family

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Mutant lambda phage repressor with a specific defect in its positive control function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

The MyoD DNA binding domain contains a recognition code for muscle-specific gene activation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

One nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

Eve and ftz regulate a wide array of genes in blastoderm embryos: the selector homeoproteins directly or indirectly regulate most genes in Drosophila

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068217

The general affinity of lac repressor for E. coli DNA: Implications for gene regulation in procaryotes and eucaryotes

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21295369

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HAP1 positive control mutants specific for one of two binding sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21295369

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Summary: genetic tinkering--local problems, local solutions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21295369

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.TIG.2011.01.001

1 reference

4 August 2017

1 reference

4 August 2017

1 reference