Extreme genetic fragility of the HIV-1 capsid. (Q34789351)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818857%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

title

Extreme genetic fragility of the HIV-1 capsid (English)

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4 March 2020

1

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4 March 2020

Sam J Wilson

2

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4 March 2020

Nicholas J. Loman

3

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4 March 2020

David Bhella

6

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4 March 2020

9

Paul D Bieniasz

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4 March 2020

author name string

Mudathir Alim

4

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4 March 2020

Saskia E Bakker

5

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4 March 2020

Robert J Gifford

7

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4 March 2020

Frazer J Rixon

8

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4 March 2020

publication date

20 June 2013

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4 March 2020

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4 March 2020

volume

9

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4 March 2020

issue

6

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4 March 2020

page(s)

e1003461

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Creative Commons Attribution 4.0 International

4 March 2020

copyright license

start time

20 June 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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The hypervariable HIV-1 capsid protein residues comprise HLA-driven CD8+ T-cell escape mutations and covarying HLA-independent polymorphisms

8 July 2018

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The major genetic determinants of HIV-1 control affect HLA class I peptide presentation

8 July 2018

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A cryptic sensor for HIV-1 activates antiviral innate immunity in dendritic cells

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Cyclophilin A-dependent restriction of human immunodeficiency virus type 1 capsid mutants for infection of nondividing cells

8 July 2018

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Imaging the biogenesis of individual HIV-1 virions in live cells

8 July 2018

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The structural biology of HIV assembly

8 July 2018

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A cell-penetrating helical peptide as a potential HIV-1 inhibitor

8 July 2018

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Evidence for direct involvement of the capsid protein in HIV infection of nondividing cells

8 July 2018

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Distribution of Fitness and Virulence Effects Caused by Single-Nucleotide Substitutions in Tobacco Etch Virus

8 July 2018

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Mutational analysis of the N-terminal domain of Moloney murine leukemia virus capsid protein

8 July 2018

1 reference

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Selection for robustness in mutagenized RNA viruses

8 July 2018

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Mutations in capsid major homology region affect assembly and membrane affinity of HIV-1 Gag.

8 July 2018

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The fittest versus the flattest: experimental confirmation of the quasispecies effect with subviral pathogens.

8 July 2018

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HIV-1 protease catalytic efficiency effects caused by random single amino acid substitutions

8 July 2018

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Hypersusceptibility to substrate analogs conferred by mutations in human immunodeficiency virus type 1 reverse transcriptase

8 July 2018

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Effects of random mutations in the human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell environments

8 July 2018

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Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1

8 July 2018

1 reference

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Evolution of mutational robustness in an RNA virus

8 July 2018

1 reference

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Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution

8 July 2018

1 reference

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A peptide inhibitor of HIV-1 assembly in vitro

8 July 2018

1 reference

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Robustness, evolvability, and neutrality

8 July 2018

1 reference

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Cyclophilin interactions with incoming human immunodeficiency virus type 1 capsids with opposing effects on infectivity in human cells

8 July 2018

1 reference

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Target cell cyclophilin A modulates human immunodeficiency virus type 1 infectivity

8 July 2018

1 reference

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

8 July 2018

1 reference

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Protein tolerance to random amino acid change

8 July 2018

1 reference

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The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus

8 July 2018

1 reference

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Species-specific tropism determinants in the human immunodeficiency virus type 1 capsid

8 July 2018

1 reference

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Capsid is a dominant determinant of retrovirus infectivity in nondividing cells

8 July 2018

1 reference

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The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys

8 July 2018

1 reference

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Assembly properties of the human immunodeficiency virus type 1 CA protein

8 July 2018

1 reference

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Perspective: Evolution and detection of genetic robustness

8 July 2018

1 reference

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Functional characterization of a portion of the Moloney murine leukemia virus gag gene by genetic footprinting

8 July 2018

1 reference

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Restriction of amino acid change in influenza A virus H3HA: comparison of amino acid changes observed in nature and in vitro

8 July 2018

1 reference

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Elimination of protease activity restores efficient virion production to a human immunodeficiency virus type 1 nucleocapsid deletion mutant

8 July 2018

1 reference

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Functional Surfaces of the Human Immunodeficiency Virus Type 1 Capsid Protein

8 July 2018

1 reference

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Identification of novel interactions in HIV-1 capsid protein assembly by high-resolution mass spectrometry.

8 July 2018

1 reference

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Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication

8 July 2018

1 reference

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Identification of a host protein essential for assembly of immature HIV-1 capsids

8 July 2018

1 reference

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Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

8 July 2018

1 reference

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Image reconstructions of helical assemblies of the HIV-1 CA protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Human immunodeficiency virus replication in a primary effusion lymphoma cell line stimulates lytic-phase replication of Kaposi's sarcoma-associated herpesvirus

8 July 2018

1 reference

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HIV-1 gag proteins: diverse functions in the virus life cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

The C-terminal half of the human immunodeficiency virus type 1 Gag precursor is sufficient for efficient particle assembly.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Mutational scan of the human immunodeficiency virus type 2 integrase protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Two classes of human papillomavirus type 16 E1 mutants suggest pleiotropic conformational constraints affecting E1 multimerization, E2 interaction, and interaction with cellular proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Sequence requirements of the HIV-1 protease flap region determined by saturation mutagenesis and kinetic analysis of flap mutants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Amino acid substitutions in the CA protein of Moloney murine leukemia virus that block early events in infection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Amino acid sequence determinants of beta-lactamase structure and activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Human immunodeficiency virus reverse transcriptase. Functional mutants obtained by random mutagenesis coupled with genetic selection in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Defective point mutants of the encephalomyocarditis virus internal ribosome entry site can be complemented in trans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

In vivo characterization of mutants of the bacteriophage f1 gene V protein isolated by saturation mutagenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Virus-specific CD8+ cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Linker insertion mutations in the human immunodeficiency virus type 1 gag gene: effects on virion particle assembly, release, and infectivity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Characterization of deletion mutations in the capsid region of human immunodeficiency virus type 1 that affect particle formation and Gag-Pol precursor incorporation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Effects of mutations in constant regions 3 and 4 of envelope of simian immunodeficiency virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Saturation mutagenesis of human interleukin-3.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Mutational sensitivity patterns define critical residues in the palm subdomain of the reverse transcriptase of human immunodeficiency virus type 1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Bacteriophage lambda cro mutations: effects on activity and intracellular degradation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Random mutagenesis used to probe the structure and function of Bacillus stearothermophilus alpha-amylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Human immunodeficiency virus proteinase dimer as component of the viral polyprotein prevents particle assembly and viral infectivity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Systematic mutation of bacteriophage T4 lysozyme

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Information-theoretical entropy as a measure of sequence variability

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Amino acid substitutions within the matrix protein of type D retroviruses affect assembly, transport and membrane association of a capsid

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Structure-activity relationships in human interleukin-1 alpha: identification of key residues for expression of biological activities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Generation and analysis of random point mutations in an antibody CDR2 sequence: many mutated antibodies lose their ability to bind antigen

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Random mutagenesis of the thymidine kinase gene of varicella-zoster virus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Mutational analysis of the major homology region of Mason-Pfizer monkey virus by use of saturation mutagenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Effects of single-point amino acid substitutions on the structure and function neuraminidase proteins in influenza A virus

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Random mutagenesis of wheat streak mosaic virus HC-Pro: non-infectious interfering mutations in a gene dispensable for systemic infection of plants

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Key interactions in HIV-1 maturation identified by hydrogen-deuterium exchange.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

HIV evolution: CTL escape mutation and reversion after transmission

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Antiviral inhibition of the HIV-1 capsid protein

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Assembly and analysis of conical models for the HIV-1 core.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

CD8+ T-cell responses to different HIV proteins have discordant associations with viral load

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688543

Proline residues in the HIV-1 NH2-terminal capsid domain: structure determinants for proper core assembly and subsequent steps of early replication

9 December 2018

1 reference

12 December 2020

Complete mutagenesis of the HIV-1 protease

1 reference

12 December 2020

Structure of the amino-terminal core domain of the HIV-1 capsid protein

1 reference

12 December 2020

A search for single substitutions that eliminate enzymatic function in a bacterial ribonuclease

1 reference

12 December 2020

10.1371/JOURNAL.PPAT.1003461

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818857%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818857%20AND%20SRC:MED&resulttype=core&format=json

4 March 2020

PubMed publication ID

23818857

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23818857%20AND%20SRC:MED&resulttype=core&format=json