Substrate tRNA recognition mechanism of eubacterial tRNA (m1A58) methyltransferase (TrmI). (Q35126725)

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28 February 2020

title

Substrate tRNA recognition mechanism of eubacterial tRNA (m1A58) methyltransferase (TrmI) (English)

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28 February 2020

5

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28 February 2020

author name string

Hiroyuki Takuma

1

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28 February 2020

Natsumi Ushio

2

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28 February 2020

Masayuki Minoji

3

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28 February 2020

Ai Kazayama

4

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28 February 2020

Akira Hirata

6

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28 February 2020

Chie Tomikawa

7

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28 February 2020

Anna Ochi

8

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28 February 2020

Hiroyuki Hori

9

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28 February 2020

language of work or name

English

0 references

publication date

15 January 2015

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Journal of Biological Chemistry

28 February 2020

published in

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28 February 2020

volume

290

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28 February 2020

issue

9

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28 February 2020

page(s)

5912-5925

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Methylated nucleosides in tRNA and tRNA methyltransferases

28 February 2020

cites work

1 reference

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Crystal structure of tRNA m(1)A58 methyltransferase TrmI from Aquifex aeolicus in complex with S-adenosyl-L-methionine

28 July 2018

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The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.

28 July 2018

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MODOMICS: a database of RNA modification pathways--2013 update

28 July 2018

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The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO)

28 July 2018

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Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity

28 July 2018

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Structural comparison of tRNA m(1)A58 methyltransferases revealed different molecular strategies to maintain their oligomeric architecture under extreme conditions

28 July 2018

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Substrate tRNA Recognition Mechanism of a Multisite-specific tRNA Methyltransferase, Aquifex aeolicus Trm1, Based on the X-ray Crystal Structure

28 July 2018

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Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus

28 July 2018

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tRNA biology charges to the front

28 July 2018

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New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA.

28 July 2018

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Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase

28 July 2018

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Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts

28 July 2018

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N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network

28 July 2018

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tRNAdb 2009: compilation of tRNA sequences and tRNA genes

28 July 2018

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Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases

28 July 2018

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The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK)

28 July 2018

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Crystal structure of Thermus thermophilus tRNA m1A58 methyltransferase and biophysical characterization of its interaction with tRNA

28 July 2018

1 reference

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RNA recognition mechanism of eukaryote tRNA (m7G46) methyltransferase (Trm8-Trm82 complex).

28 July 2018

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Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA.

28 July 2018

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Substrate tRNA recognition mechanism of tRNA (m7G46) methyltransferase from Aquifex aeolicus.

28 July 2018

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Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae

28 July 2018

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A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase

28 July 2018

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Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures

28 July 2018

1 reference

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Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism

28 July 2018

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Mutation of the methylated tRNA(Lys)(3) residue A58 disrupts reverse transcription and inhibits replication of human immunodeficiency virus type 1.

28 July 2018

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Crystal structure of Rv2118c: an AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv

28 July 2018

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The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

28 July 2018

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The Gcd10p/Gcd14p complex is the essential two-subunit tRNA(1-methyladenosine) methyltransferase of Saccharomyces cerevisiae

28 July 2018

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Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus

28 July 2018

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Characterisation and enzymatic properties of tRNA(guanine 26, N (2), N (2))-dimethyltransferase (Trm1p) from Pyrococcus furiosus

28 July 2018

1 reference

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Transfer RNA modification enzymes from Pyrococcus furiosus: detection of the enzymatic activities in vitro

28 July 2018

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Substrate recognition of tRNA (Guanosine-2'-)-methyltransferase from Thermus thermophilus HB27

28 July 2018

1 reference

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Enzymatic formation of modified nucleosides in tRNA: dependence on tRNA architecture

28 July 2018

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A novel enzymatic pathway leading to 1-methylinosine modification in Haloferax volcanii tRNA.

28 July 2018

1 reference

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Transfer Ribonucleic Acid Methylases During the Germination of Neurospora crassa

28 July 2018

1 reference

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Structure of yeast phenylalanine tRNA at 3 Å resolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342497

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

28 July 2018

1 reference

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Bases methylated in vitro by cell-free extracts of adenovirus-18-induced tumours

28 July 2018

1 reference

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tRNA (adenine-N1)-methyltransferase from Dictyostelium discoideum. Purification, characterization and developmental changes in activity.

28 July 2018

1 reference

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The T-arm of tRNA is a substrate for tRNA (m5U54)-methyltransferase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4342497

Sequence and base modifications of two phenylalanine-tRNAs from Thermus thermophilus HB8

28 July 2018

1 reference

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Heat-induced stability of tRNA from an extreme thermophile, Thermus thermophilus

28 July 2018

1 reference

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Recognition of individual Escherichia coli transfer ribonucleic acids by 1-adenine-specific methyltransferase from rat liver

28 July 2018

1 reference

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Transfer RNA methyltransferases from yellow lupin seeds: purification and properties

28 July 2018

1 reference

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Purification and properties of tRNA(adenine-1)-methyltransferase from rat liver

28 July 2018

1 reference

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Dynamics of RNA modification by a multi-site-specific tRNA methyltransferase

28 July 2018

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Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs

27 September 2018

1 reference

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A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesis

27 September 2018

1 reference

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The 2'-O-methylation status of a single guanosine controls transfer RNA-mediated Toll-like receptor 7 activation or inhibition

27 September 2018

1 reference

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Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA.

27 September 2018

1 reference

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The substrate specificity of tRNA (m1G37) methyltransferase (TrmD) from Aquifex aeolicus

27 September 2018

1 reference

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Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution

27 September 2018

1 reference

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Conserved bases in the TPsi C loop of tRNA are determinants for thermophile-specific 2-thiouridylation at position 54.

27 September 2018

1 reference

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The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.

27 September 2018

1 reference

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A gene involved in modifying transfer RNA is required for fungal pathogenicity and stress tolerance of Colletotrichum lagenarium

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M114.606038

Improved solid-phase DNA probe method for tRNA purification: large-scale preparation and alteration of DNA fixation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25593312

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Two tRNAIle1 species from an extreme thermophile, Thermus thermophilus HB8: effect of 2-thiolation of ribothymidine on the thermostability of tRNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25593312

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Differences in the Methylation of Transfer Ribonucleic Acid in Vitro by the Mitochondrial and Cytoplasmic Transfer Ribonucleic Acid Methylases of HeLa Cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25593312

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M114.606038

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25593312%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25593312%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

25593312

1 reference