Comprehensive analysis of the whole transcriptomes from two different pig breeds using RNA-Seq method. (Q35194274)

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21 March 2020

title

Comprehensive analysis of the whole transcriptomes from two different pig breeds using RNA-Seq method (English)

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21 March 2020

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Katarzyna Ropka-Molik

1

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21 March 2020

Kacper Żukowski

2

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21 March 2020

Artur Gurgul

4

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21 March 2020

Katarzyna Piórkowska

5

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21 March 2020

Maria Oczkowicz

6

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21 March 2020

author name string

Robert Eckert

3

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21 March 2020

publication date

24 June 2014

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21 March 2020

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21 March 2020

volume

45

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21 March 2020

issue

5

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21 March 2020

page(s)

674-684

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describes a project that uses

21 March 2020

1 reference

Differential expression analysis for sequence count data

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 January 2018

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Comparison of prenatal muscle tissue expression profiles of two pig breeds differing in muscle characteristics

21 January 2018

1 reference

Joint analysis of quantitative trait loci and major-effect causative mutations affecting meat quality and carcass composition traits in pigs

21 January 2018

1 reference

RNA-SeQC: RNA-seq metrics for quality control and process optimization

21 January 2018

1 reference

FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms

21 January 2018

1 reference

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

21 January 2018

1 reference

Transcriptome architecture across tissues in the pig

21 January 2018

1 reference

Quantitative trait loci for production traits in pigs: a combined analysis of two Meishan x Large White populations

21 January 2018

1 reference

Porcine SPP1 gene polymorphism association with phenotypic traits in the Landrace × Jeju (Korea) Black pig F2 population.

21 January 2018

1 reference

Biases in Illumina transcriptome sequencing caused by random hexamer priming

21 January 2018

1 reference

Expression profiling of cytokines and related genes in regenerating skeletal muscle after cardiotoxin injection: a role for osteopontin

21 January 2018

1 reference

MyoD induces myogenic differentiation through cooperation of its NH2- and COOH-terminal regions.

21 January 2018

1 reference

RNA-Seq reveals differentially expressed isoforms and novel splice variants in buccal mucosal cancer

21 January 2018

1 reference

Uterine expression of epidermal growth factor family during the course of pregnancy in pigs.

21 January 2018

1 reference

Role of the cytokine-induced SH2 domain-containing protein CIS in growth hormone receptor internalization

21 January 2018

1 reference

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

SAMStat: monitoring biases in next generation sequencing data

21 January 2018

1 reference

Modeling non-uniformity in short-read rates in RNA-Seq data

21 January 2018

1 reference

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

21 January 2018

1 reference

Identification of genes differentially expressed during prenatal development of skeletal muscle in two pig breeds differing in muscularity

21 January 2018

1 reference

Transcript length bias in RNA-seq data confounds systems biology

21 January 2018

1 reference

Genome-wide allele-specific analysis: insights into regulatory variation

21 January 2018

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Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

21 January 2018

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

21 January 2018

1 reference

Novel porcine housekeeping genes for real-time RT-PCR experiments normalization in adipose tissue: assessment of leptin mRNA quantity in different pig breeds.

21 January 2018

1 reference

Improving RNA-Seq expression estimates by correcting for fragment bias

21 January 2018

1 reference

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

1 reference

A scaling normalization method for differential expression analysis of RNA-seq data

21 January 2018

1 reference

Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes.

21 January 2018

1 reference

Deep sequencing of the porcine endometrial transcriptome on day 14 of pregnancy

21 January 2018

1 reference

Transcriptome changes in the porcine endometrium during the preattachment phase

21 January 2018

1 reference

Epidermal growth factor receptor signaling modulates apoptosis via p38alpha MAPK-dependent activation of Bax in intestinal epithelial cells

21 January 2018

1 reference

Bridging endometrial receptivity and implantation: network of hormones, cytokines, and growth factors

21 January 2018

1 reference

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

Osteopontin: role in immune regulation and stress responses

21 January 2018

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

21 January 2018

1 reference

Upstream regulatory role for XIAP in receptor-mediated apoptosis

21 January 2018

1 reference

The bench scientist's guide to statistical analysis of RNA-Seq data

21 January 2018

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Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle

21 January 2018

1 reference

Role of the Cytokine-inducible SH2 Protein CIS in Desensitization of STAT5b Signaling by Continuous Growth Hormone

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1111/AGE.12184

1 reference

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21 March 2020

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