Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control (Q35202170)

7 August 2017

title

Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control (English)

1 reference

7 August 2017

Y Guo

1

1 reference

7 August 2017

C M Lew

series ordinal

2

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7 August 2017

J D Gralla

series ordinal

3

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7 August 2017

publication date

1 September 2000

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7 August 2017

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7 August 2017

volume

14

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7 August 2017

issue

17

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7 August 2017

page(s)

2242-2255

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Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

7 August 2017

cites work

1 reference

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The use of ATP and initiating nucleotides during postrecruitment steps at the activated adenovirus E4 promoter

13 July 2018

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Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

13 July 2018

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MgATP binding and hydrolysis determinants of NtrC, a bacterial enhancer-binding protein

13 July 2018

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A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor

13 July 2018

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Transcription elongation: structural basis and mechanisms

13 July 2018

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Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners

13 July 2018

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13 July 2018

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Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization

13 July 2018

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Multiple in vivo roles for the -12-region elements of sigma 54 promoters.

13 July 2018

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DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

13 July 2018

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Promoter opening via a DNA fork junction binding activity

13 July 2018

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Protein-protein contacts that activate and repress prokaryotic transcription

13 July 2018

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A mutant RNA polymerase that forms unusual open promoter complexes

13 July 2018

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Probing the assembly of transcription initiation complexes through changes in sigmaN protease sensitivity

13 July 2018

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Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: roles for DNA and protein determinants

13 July 2018

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Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

13 July 2018

1 reference

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Mutant forms of the enhancer-binding protein NtrC can activate transcription from solution

13 July 2018

1 reference

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Isolation and properties of enhancer-bypass mutants of sigma 54.

13 July 2018

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13 July 2018

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Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing

13 July 2018

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DNA topology and a minimal set of basal factors for transcription by RNA polymerase II

13 July 2018

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Alterations of highly conserved residues in the regulatory domain of nitrogen regulator I (NtrC) of Escherichia coli.

13 July 2018

1 reference

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In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).

13 July 2018

1 reference

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Promoter opening (melting) and transcription initiation by RNA polymerase I requires neither nucleotideβ,γhydrolysis norprotein phosphorylation

13 July 2018

1 reference

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The bacterial enhancer-binding protein NTRC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation

13 July 2018

1 reference

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Mechanism and control of transcription initiation in prokaryotes

13 July 2018

1 reference

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Function of a bacterial activator protein that binds to transcriptional enhancers

13 July 2018

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Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID).

13 July 2018

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Structural motifs and potential sigma homologies in the large subunit of human general transcription factor TFIIE.

13 July 2018

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RNA polymerase II: subunit structure and function

13 July 2018

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Formation of open and elongating transcription complexes by RNA polymerase III.

13 July 2018

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The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent

13 July 2018

1 reference

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Polymerase II promoter activation: closed complex formation and ATP-driven start site opening

13 July 2018

1 reference

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Yeast RNA polymerase II at 5 A resolution

13 July 2018

1 reference

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Crucial role of the RNA:DNA hybrid in the processivity of transcription

26 September 2018

1 reference

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ATP-induced protein-Hsp70 complex dissociation requires K+ but not ATP hydrolysis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=316896

Converting Escherichia coli RNA polymerase into an enhancer-responsive enzyme: role of an NH2-terminal leucine patch in sigma 54.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=316896

The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=316896

Studies of RNA chain initiation by Escherichia coli RNA polymerase bound to T7 DNA. Direct analysis of the kinetics of RNA chain initiation at T7 promoter A2

26 September 2018

1 reference

12 December 2020

Calorimetric and spectroscopic investigation of the helix-to-coil transition of the self-complementary deoxyribonucleotide ATGCAT

1 reference

12 December 2020

Photoaffinity cross-linking of TaqI restriction endonuclease using an aryl azide linked to the phosphate backbone

1 reference

12 December 2020

In vivo and in vitro activities of the Escherichia coli sigma54 transcription activator, PspF, and its DNA-binding mutant, PspFDeltaHTH

1 reference

12 December 2020

Functions of the ς54Region Iin Transand Implications for Transcription Activation

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.794800

1 reference

7 August 2017

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7 August 2017

1 reference