Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines (Q35399488)

8 August 2017

title

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines (English)

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alternative mRNA splicing, via spliceosome

8 August 2017

main subject

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Auinash Kalsotra

5

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author name string

John C Castle

1

1 reference

8 August 2017

Chaolin Zhang

2

1 reference

8 August 2017

Jyoti K Shah

3

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8 August 2017

Amit V Kulkarni

4

1 reference

8 August 2017

Thomas A Cooper

6

1 reference

8 August 2017

Jason M Johnson

7

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8 August 2017

language of work or name

English

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publication date

2 November 2008

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8 August 2017

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8 August 2017

volume

40

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8 August 2017

issue

12

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8 August 2017

page(s)

1416-1425

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A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart

8 August 2017

cites work

1 reference

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12 July 2018

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12 July 2018

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Alternative splicing events identified in human embryonic stem cells and neural progenitors

12 July 2018

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The Fox-1 family and SUP-12 coordinately regulate tissue-specific alternative splicing in vivo

12 July 2018

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A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing

12 July 2018

1 reference

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Functional coordination of alternative splicing in the mammalian central nervous system

12 July 2018

1 reference

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Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements

12 July 2018

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A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing

12 July 2018

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Discovery of tissue-specific exons using comprehensive human exon microarrays

12 July 2018

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

12 July 2018

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Unusual intron conservation near tissue-regulated exons found by splicing microarrays

12 July 2018

1 reference

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Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing

12 July 2018

1 reference

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Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals

12 July 2018

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Nova regulates brain-specific splicing to shape the synapse

12 July 2018

1 reference

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A combinatorial code for splicing silencing: UAGG and GGGG motifs

12 July 2018

1 reference

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Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities

12 July 2018

1 reference

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A microarray configuration to quantify expression levels and relative abundance of splice variants

12 July 2018

1 reference

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Identification and analysis of alternative splicing events conserved in human and mouse

12 July 2018

1 reference

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The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons

12 July 2018

1 reference

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Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment

12 July 2018

1 reference

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Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform

12 July 2018

1 reference

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The functional landscape of mouse gene expression

12 July 2018

1 reference

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Finishing the euchromatic sequence of the human genome

12 July 2018

1 reference

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Single nucleotide polymorphism-based validation of exonic splicing enhancers

12 July 2018

1 reference

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Muscleblind proteins regulate alternative splicing

12 July 2018

1 reference

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RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

12 July 2018

1 reference

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Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

12 July 2018

1 reference

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CLIP identifies Nova-regulated RNA networks in the brain

12 July 2018

1 reference

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Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing

12 July 2018

1 reference

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Predictive identification of exonic splicing enhancers in human genes

12 July 2018

1 reference

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Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing

12 July 2018

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Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

12 July 2018

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The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

12 July 2018

1 reference

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The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain

12 July 2018

1 reference

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

12 July 2018

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Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

12 July 2018

1 reference

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Role of an inhibitory pyrimidine element and polypyrimidine tract binding protein in repression of a regulated alpha-tropomyosin exon

12 July 2018

1 reference

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In vivo regulation of alternative pre-mRNA splicing by the Clk1 protein kinase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

Conserved intron elements repress splicing of a neuron-specific c-src exon in vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

Phase I trial with the CD44v6-targeting immunoconjugate bivatuzumab mertansine in head and neck squamous cell carcinoma

12 July 2018

1 reference

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Genome-wide analysis of transcript isoform variation in humans

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

An RNA map predicting Nova-dependent splicing regulation

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

Rosetta error model for gene expression analysis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

Detection of novel splice forms in human and mouse using cross-species approach.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3197713

ALEXA: a microarray design platform for alternative expression analysis

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.264

Safety and pharmacokinetics of bivatuzumab mertansine in patients with CD44v6-positive metastatic breast cancer: final results of a phase I study

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18978788

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NG.264

1 reference

Dimensions Publication ID

8 August 2017

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1 reference

8 August 2017

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