Distant cis-regulatory elements in human skeletal muscle differentiation. (Q35588547)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21907276%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

Distant cis-regulatory elements in human skeletal muscle differentiation (English)

1 reference

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12 February 2020

main subject

cis-regulatory element

1 reference

1

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12 February 2020

4

Martha L Bulyk

1 reference

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12 February 2020

author name string

Vicky W Zhou

series ordinal

2

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12 February 2020

Tiffany Yuh

series ordinal

3

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12 February 2020

publication date

23 August 2011

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12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21907276%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

volume

98

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12 February 2020

issue

6

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12 February 2020

page(s)

401-411

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Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

12 February 2020

cites work

1 reference

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12 July 2018

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In the loop: long range chromatin interactions and gene regulation

12 July 2018

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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

12 July 2018

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MyoD directly up-regulates premyogenic mesoderm factors during induction of skeletal myogenesis in stem cells.

12 July 2018

1 reference

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miRBase: integrating microRNA annotation and deep-sequencing data

12 July 2018

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Temporal microRNA expression during in vitro myogenic progenitor cell proliferation and differentiation: regulation of proliferation by miR-682

12 July 2018

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Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

12 July 2018

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Chromatin insulator and the promoter targeting sequence modulate the timing of long-range enhancer-promoter interactions in the Drosophila embryo

12 July 2018

1 reference

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A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance

12 July 2018

1 reference

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Finding distal regulatory elements in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

12 July 2018

1 reference

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CTCF: master weaver of the genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Genomic interactions: chromatin loops and gene meeting points in transcriptional regulation.

12 July 2018

1 reference

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

12 July 2018

1 reference

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The emergence of lineage-specific chromosomal topologies from coordinate gene regulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

ChIP-seq accurately predicts tissue-specific activity of enhancers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

High-resolution DNA-binding specificity analysis of yeast transcription factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Purification of proteins associated with specific genomic Loci

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Chromatin dynamics and gene positioning

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Systematic identification of mammalian regulatory motifs' target genes and functions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

A chromatin landmark and transcription initiation at most promoters in human cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Chromatin immunoprecipitation and microarray-based analysis of protein location

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

The cytoskeleton-associated PDZ-LIM protein, ALP, acts on serum response factor activity to regulate muscle differentiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Defining the mammalian CArGome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

MyoD and the transcriptional control of myogenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

An initial blueprint for myogenic differentiation

12 July 2018

1 reference

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Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Transcriptional networks: reverse-engineering gene regulation on a global scale

12 July 2018

1 reference

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Decoding human regulatory circuits

12 July 2018

1 reference

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The Gene Ontology (GO) database and informatics resource

12 July 2018

1 reference

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Looping and interaction between hypersensitive sites in the active beta-globin locus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Promoter-specific regulation of MyoD binding and signal transduction cooperate to pattern gene expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Capturing chromosome conformation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Human cardiac stem cell differentiation is regulated by a mircrine mechanism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

The three 'C' s of chromosome conformation capture: controls, controls, controls.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

Human-mouse genome comparisons to locate regulatory sites

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3229301

The chromatin-remodeling enzyme BRG1 coordinates CIITA induction through many interdependent distal enhancers

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.08.003

10.1016/J.YGENO.2011.08.003

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21907276%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21907276%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

PubMed publication ID

21907276

1 reference