From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem. (Q35620839)

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scientific article published on 10 August 2011

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English	From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem.	scientific article published on 10 August 2011

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10 February 2020

From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem (English)

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10 February 2020

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10 February 2020

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10 February 2020

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10 February 2020

Damien Goutte-Gattat

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10 February 2020

Dimitar Angelov

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10 February 2020

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10 February 2020

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Manu Shubhdarshan Shukla

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10 February 2020

Jeffrey J Hayes

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10 February 2020

Stefan Dimitrov

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10 February 2020

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10 August 2011

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10 February 2020

Nucleic Acids Research

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10 February 2020

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10 February 2020

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10 February 2020

9139-9154

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10 February 2020

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Creative Commons Attribution-NonCommercial 3.0 Unported

4 October 2016

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On the structure and dynamics of the complex of the nucleosome and the linker histone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Structure of RCC1 chromatin factor bound to the nucleosome core particle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Remosomes: RSC generated non-mobilized particles with approximately 180 bp DNA loosely associated with the histone octamer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Distinctive sequence patterns in metazoan and yeast nucleosomes: implications for linker histone binding to AT-rich and methylated DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Nucleosome shape dictates chromatin fiber structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Single-pair FRET microscopy reveals mononucleosome dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Atomic force microscopy imaging of SWI/SNF action: mapping the nucleosome remodeling and sliding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Complex of linker histone H5 with the nucleosome and its implications for chromatin packing

1 reference

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12 July 2018

EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure

1 reference

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12 July 2018

Histone H4-K16 acetylation controls chromatin structure and protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Mapping the interaction surface of linker histone H1(0) with the nucleosome of native chromatin in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Rapid spontaneous accessibility of nucleosomal DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

The histone octamer is invisible when NF-kappaB binds to the nucleosome

1 reference

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12 July 2018

UCSF Chimera--a visualization system for exploratory research and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Molecular modeling of the chromatosome particle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

The structure of DNA in the nucleosome core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Nucleosome Repositioning via Loop Formation

1 reference

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12 July 2018

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

Computer simulation of the 30-nanometer chromatin fiber.

1 reference

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12 July 2018

Salt-induced conformation and interaction changes of nucleosome core particles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

The N-terminus of histone H2B, but not that of histone H3 or its phosphorylation, is essential for chromosome condensation

1 reference

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12 July 2018

The packing density in proteins: standard radii and volumes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

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Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

1 reference

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Position and orientation of the globular domain of linker histone H5 on the nucleosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

12 July 2018

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

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DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

1 reference

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12 July 2018

Chromatin fiber structure: morphology, molecular determinants, structural transitions.

1 reference

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12 July 2018

Crystal structure of the nucleosome core particle at 2.8 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

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1 reference

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12 July 2018

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

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1 reference

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1 reference

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1 reference

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Chromatin Structure: A Repeating Unit of Histones and DNA

1 reference

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Structure of Chromatin

1 reference

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1 reference

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DNA nanomechanics in the nucleosome

1 reference

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25 September 2018

The effect of internucleosomal interaction on folding of the chromatin fiber

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3241633

25 September 2018

From rigid base pairs to semiflexible polymers: coarse-graining DNA.

1 reference

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25 September 2018

Histone octamer instability under single molecule experiment conditions.

1 reference

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Sequence-dependent solution structure and motions of 13 TATA/TBP (TATA-box binding protein) complexes

1 reference

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25 September 2018

The role of histone H1 and non-structured domains of core histones in maintaining the orientation of nucleosomes within the chromatin fiber

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction and analysis of parallel and antiparallel Holliday junctions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymer reptation and nucleosome repositioning

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Portrait of a molecule

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin Fiber Folding: Requirement for the Histone H4 N-terminal Tail

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin Dynamics: Nucleosomes go Mobile through Twist Defects

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA spools under tension

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tail-induced attraction between nucleosome core particles

1 reference

https://pubmed.ncbi.nlm.nih.gov/21835779

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKR573

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21835779%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21835779%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

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Europe PubMed Central

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10 February 2020

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