Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover (Q35813310)

10 August 2017

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title

Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover (English)

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10 August 2017

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Thomas J Bollenbach

1

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10 August 2017

Gadi Schuster

series ordinal

2

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10 August 2017

David B Stern

series ordinal

3

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10 August 2017

publication date

1 January 2004

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Progress in Molecular Biology and Translational Science

10 August 2017

published in

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10 August 2017

volume

78

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10 August 2017

page(s)

305-337

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Interspecific evolution: microbial symbiosis, endosymbiosis and gene transfer.

10 August 2017

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Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression

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The 3' untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators

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7 January 2021

3'end maturation of the Chlamydomonas reinhardtii chloroplast atpB mRNA is a two-step process

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7 January 2021

Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 of PS II

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7 January 2021

In vivo evidence for 5'-->3' exoribonuclease degradation of an unstable chloroplast mRNA.

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An mRNA 3' processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts

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The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability

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7 January 2021

Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii

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7 January 2021

Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells

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7 January 2021

Poly(A) polymerase and poly(g) polymerase in wheat chloroplasts

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7 January 2021

Poly(adenylic acid)-containing RNA from plastids of maize

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7 January 2021

Poly(A)-associated RNA from the mitochondrial fraction of the fungus Trichoderma

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7 January 2021

Polyadenylation of mRNA in prokaryotes

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7 January 2021

mRNA degradation. A tale of poly(A) and multiprotein machines.

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7 January 2021

Degradation of mRNA in Escherichia coli: an old problem with some new twists

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7 January 2021

Surprises at the 3' end of prokaryotic RNA

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7 January 2021

Degradation of mRNA in bacteria: emergence of ubiquitous features

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7 January 2021

Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhadtii

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Addition of destabilizing poly (A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA.

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7 January 2021

Polyadenylation and degradation of mRNA in the chloroplast

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7 January 2021

Evidence for in vivo modulation of chloroplast RNA stability by 3'-UTR homopolymeric tails in Chlamydomonas reinhardtii

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7 January 2021

The mechanism of preferential degradation of polyadenylated RNA in the chloroplast. The exoribonuclease 100RNP/polynucleotide phosphorylase displays high binding affinity for poly(A) sequence

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7 January 2021

Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins

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7 January 2021

The poly(A) tail of mRNAs: bodyguard in eukaryotes, scavenger in bacteria

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7 January 2021

Degrading chloroplast mRNA: the role of polyadenylation

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7 January 2021

Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli

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7 January 2021

Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP

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7 January 2021

A plant poly(A) polymerase requires a novel RNA-binding protein for activity

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7 January 2021

Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts

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7 January 2021

PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

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7 January 2021

RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli

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7 January 2021

Polyadenylation of stable RNA precursors in vivo

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7 January 2021

TheEscherichia coliRNA degradosome: structure, function and relationship to other ribonucleolytic multienyzme complexes

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7 January 2021

An mRNA degrading complex in Rhodobacter capsulatus.

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7 January 2021

The yeast mitochondrial degradosome. Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism

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7 January 2021

Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach

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7 January 2021

Yeast mitochondrial RNA does not contain poly(A)

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7 January 2021

Yeast mitochondrial RNA contains a short polyadenylic acid segment

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7 January 2021

Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

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7 January 2021

Gene affecting longevity of messenger RNA: A mutant ofEscherichia coli with altered mRNA stability

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7 January 2021

A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA

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7 January 2021

Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli

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7 January 2021

Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E

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7 January 2021

Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

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7 January 2021

Regions of RNase E important for 5'-end-dependent RNA cleavage and autoregulated synthesis

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7 January 2021

A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains

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7 January 2021

The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus

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7 January 2021

The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes

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7 January 2021

CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease

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7 January 2021

The spinach chloroplast endoribonuclease CSP41 cleaves the 3'-untranslated region of petD mRNA primarily within its terminal stem-loop structure

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7 January 2021

CSP41a, a multifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts

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Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteroid dehydrogenases

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Three-dimensional structure of D-glyceraldehyde-3-phosphate dehydrogenase

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7 January 2021

Divalent metal-dependent catalysis and cleavage specificity of CSP41, a chloroplast endoribonuclease belonging to the short chain dehydrogenase/reductase superfamily

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7 January 2021

Identification of the NAD(+)-binding fold of glyceraldehyde-3-phosphate dehydrogenase as a novel RNA-binding domain.

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7 January 2021

Dehydrogenases from all three domains of life cleave RNA.

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7 January 2021

Gene-specific trans-regulatory functions of magnesium for chloroplast mRNA stability in higher plants

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Light-induced increase in free Mg2+ concentration in spinach chloroplasts: measurement of free Mg2+ by using a fluorescent probe and necessity of stromal alkalinization

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7 January 2021

Chloroplast gene expression: how plants turn their plastids on.

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7 January 2021

Depletion of yeast RNase III blocks correct U2 3' end formation and results in polyadenylated but functional U2 snRNA.

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7 January 2021

mRNA decay in spinach chloroplasts: psbA mRNA degradation is initiated by endonucleolytic cleavages within the coding region

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7 January 2021

Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

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7 January 2021

The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.). Integration of a prokaryotic core into a larger complex with organelle-specific functions

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7 January 2021

Messenger RNA stability and its role in control of gene expression in bacteria and phages

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7 January 2021

Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

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7 January 2021

Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica.

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7 January 2021

Identification and cloning of human polynucleotide phosphorylase, hPNPase old-35, in the context of terminal differentiation and cellular senescence

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7 January 2021

Down-regulation of Myc as a Potential Target for Growth Arrest Induced by Human Polynucleotide Phosphorylase (hPNPase) in Human Melanoma Cells

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7 January 2021

Human polynucleotide phosphorylase, hPNPase, is localized in mitochondria.

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7 January 2021

Protein-protein interactions of hCsl4p with other human exosome subunits

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7 January 2021

A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation

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7 January 2021

Running rings around RNA: a superfamily of phosphate-dependent RNases.

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7 January 2021

Exoribonuclease superfamilies: structural analysis and phylogenetic distribution

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7 January 2021

A complex prediction: three-dimensional model of the yeast exosome.

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7 January 2021

Escherichia coli ribonuclease II

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7 January 2021

Genome sequence of Halobacterium species NRC-1

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7 January 2021

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

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7 January 2021

Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II.

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7 January 2021

The presence of only one of five exoribonucleases is sufficient to support the growth of Escherichia coli

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7 January 2021

mRNA decay in Escherichia coli comes of age.

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7 January 2021

The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA.

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7 January 2021

Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively

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7 January 2021

Novel features of the XRN-family in Arabidopsis: evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm

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7 January 2021

Comparative genomics and evolution of proteins involved in RNA metabolism

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7 January 2021

cDNA cloning confirms the polyadenylation of RNA decay intermediates in Streptomyces coelicolor.

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7 January 2021

An exosome-like complex in Sulfolobus solfataricus

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7 January 2021

The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(A) polymerase, can polyadenylate RNA.

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7 January 2021

Nitrogen vs. phosphorus limitation across an ecotonal gradient in a mangrove forest

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7 January 2021

Phosphorus limitation of coastal ecosystem processes

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7 January 2021

Phosphate sensing in higher plants

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7 January 2021

PHOSPHATE ACQUISITION.

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7 January 2021

Molecular mechanisms of phosphate transport in plants

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7 January 2021

Light-Dependent Redistribution of Ions in Suspensions of Chloroplast Thylakoid Membranes

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7 January 2021

Magnesium transport and function in plants: the tip of the iceberg

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7 January 2021

Kinetic analysis of the M1 RNA folding pathway

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7 January 2021

Metal ion catalysis in the Tetrahymena ribozyme reaction

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7 January 2021

On the role of magnesium ions in RNA stability

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7 January 2021

Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs

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7 January 2021

Changes in the 5'-untranslated region of the rbcL gene accelerate transcript degradation more than 50-fold in the chloroplast of Chlamydomonas reinhardtii

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7 January 2021

rbcL Transcript levels in tobacco plastids are independent of light: reduced dark transcription rate is compensated by increased mRNA stability

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7 January 2021

The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3' end formation in vitro

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https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Differential Transcription of Pea Chloroplast Genes during Light-Induced Leaf Development (Continuous Far-Red Light Activates Chloroplast Transcription).

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Endonucleolytic activation directs dark-induced chloroplast mRNA degradation.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

E. coli RNases: making sense of alphabet soup

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

New molecular phenotypes in the dst mutants of Arabidopsis revealed by DNA microarray analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Life after transcription--revisiting the fate of messenger RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

Novel approach in plastid transformation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

The reductive pentose phosphate cycle for photosynthetic CO2 assimilation: enzyme modulation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2804%2978008-3

7 January 2021

10.1016/S0079-6603(04)78008-3

Identifiers

DOI

1 reference

10 August 2017

1 reference