Computational approaches to unveiling ancient genome duplications (Q35930713)

11 August 2017

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title

Computational approaches to unveiling ancient genome duplications (English)

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11 August 2017

main subject

whole genome duplication

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1

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11 August 2017

publication date

1 October 2004

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11 August 2017

published in

Nature Reviews Genetics

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11 August 2017

volume

5

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11 August 2017

issue

10

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11 August 2017

page(s)

752-763

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Extensive genomic duplication during early chordate evolution

11 August 2017

cites work

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Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

21 January 2018

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The human Hox-bearing chromosome regions did arise by block or chromosome (or even genome) duplications

21 January 2018

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Numerous groups of chromosomal regional paralogies strongly indicate two genome doublings at the root of the vertebrates

21 January 2018

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New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes

21 January 2018

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Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

21 January 2018

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More genes in vertebrates?

21 January 2018

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Polyploid Incidence and Evolution

21 January 2018

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

21 January 2018

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Zebrafish hox clusters and vertebrate genome evolution

21 January 2018

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Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning

21 January 2018

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Zebrafish comparative genomics and the origins of vertebrate chromosomes

21 January 2018

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A comparative map of the zebrafish genome

21 January 2018

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Genome duplication, a trait shared by 22000 species of ray-finned fish

21 January 2018

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Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions

21 January 2018

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Yesterday's polyploids and the mystery of diploidization

21 January 2018

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Testing the parsimony test of genome duplications: a counterexample.

21 January 2018

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Turning the clock back on ancient genome duplication

21 January 2018

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Basic local alignment search tool

21 January 2018

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The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

21 January 2018

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Building genomic profiles for uncovering segmental homology in the twilight zone

21 January 2018

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Molecular evidence for an ancient duplication of the entire yeast genome

21 January 2018

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The origins of genomic duplications in Arabidopsis.

21 January 2018

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The evolutionary fate and consequences of duplicate genes

21 January 2018

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Evidence in favour of ancient octaploidy in the vertebrate genome

21 January 2018

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Selection and gene duplication: a view from the genome

21 January 2018

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The hidden duplication past of Arabidopsis thaliana

21 January 2018

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Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice

21 January 2018

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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 January 2018

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The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

21 January 2018

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Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

21 January 2018

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A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

21 January 2018

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Evidence of en bloc duplication in vertebrate genomes

21 January 2018

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Gene duplication and the structure of eukaryotic genomes

21 January 2018

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Recent segmental duplications in the human genome

21 January 2018

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Analysis of segmental duplications and genome assembly in the mouse

21 January 2018

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Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

21 January 2018

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Recent segmental duplications in the working draft assembly of the brown Norway rat.

21 January 2018

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Extensive duplication and reshuffling in the Arabidopsis genome

21 January 2018

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Comparative genomics of plant chromosomes

21 January 2018

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Investigating ancient duplication events in the Arabidopsis genome

21 January 2018

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Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

21 January 2018

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Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

21 January 2018

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Evidence that rice and other cereals are ancient aneuploids

21 January 2018

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Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

21 January 2018

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 January 2018

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The evolutionary demography of duplicate genes

21 January 2018

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Phylogenetic tests of the hypothesis of block duplication of homologous genes on human chromosomes 6, 9, and 1.

21 January 2018

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Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference

21 January 2018

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Yeast genome duplication was followed by asynchronous differentiation of duplicated genes

21 January 2018

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A comparative phylogenetic approach for dating whole genome duplication events

21 January 2018

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Are all fishes ancient polyploids?

21 January 2018

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Eukaryote genome duplication - where's the evidence?

21 January 2018

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2R or not 2R: testing hypotheses of genome duplication in early vertebrates.

21 January 2018

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Were vertebrates octoploid?

21 January 2018

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Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins

21 January 2018

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The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.

21 January 2018

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Different evolutionary patterns between young duplicate genes in the human genome

21 January 2018

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Gene order evolution and paleopolyploidy in hemiascomycete yeasts

21 January 2018

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Recent segmental and gene duplications in the mouse genome

21 January 2018

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Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence

21 January 2018

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Detection of gene duplications and block duplications in eukaryotic genomes

21 January 2018

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Evolutionary genomics: yeasts accelerate beyond BLAST.

21 January 2018

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Genome evolution in yeasts

21 January 2018

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Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes

21 January 2018

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Tests for gene clustering.

21 January 2018

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Twilight zone of protein sequence alignments

21 January 2018

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Evolutionary analyses of the human genome

21 January 2018

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An efficient algorithm for large-scale detection of protein families

21 January 2018

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Fast identification and statistical evaluation of segmental homologies in comparative maps.

21 January 2018

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Vertebrate evolution: doubling and shuffling with a full deck

21 January 2018

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Are we polyploids? A brief history of one hypothesis

21 January 2018

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

21 January 2018

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Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

21 January 2018

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Updated map of duplicated regions in the yeast genome

21 January 2018

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Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae

21 January 2018

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Vertebrate evolution: Something fishy about Hox genes

21 January 2018

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Functional evolution in the ancestral lineage of vertebrates or when genomic complexity was wagging its morphological tail

21 January 2018

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31 March 2020

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Subfunction partitioning, the teleost radiation and the annotation of the human genome.

31 March 2020

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Patterns of Gene Duplication in Saccharomyces cerevisiae and Caenorhabditis elegans

31 March 2020

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Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana

31 March 2020

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Unbiased estimation of the rates of synonymous and nonsynonymous substitution

31 March 2020

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Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history

31 March 2020

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Is tetralogy true? Lack of support for the "one-to-four rule"

31 March 2020

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31 March 2020

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Extent of gene duplication in the genomes of Drosophila, nematode, and yeast

31 March 2020

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Vertebrate evolution by interspecific hybridisation--are we polyploid?

31 March 2020

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Ancestral genome duplication in rice

31 March 2020

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

31 March 2020

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inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NRG1449

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11 August 2017

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