An elaborate classification of SNARE proteins sheds light on the conservation of the eukaryotic endomembrane system (Q35949003)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17596510%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

title

An elaborate classification of SNARE proteins sheds light on the conservation of the eukaryotic endomembrane system (English)

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1 January 2020

3

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author name string

Tobias H Kloepper

series ordinal

1

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1 January 2020

C Nickias Kienle

series ordinal

2

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publication date

27 June 2007

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Molecular Biology of the Cell

1 January 2020

published in

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1 January 2020

volume

18

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issue

9

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1 January 2020

page(s)

3463-3471

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Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins

1 January 2020

cites work

1 reference

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Identification of Plasmodium falciparum family of SNAREs

2 October 2017

1 reference

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Early endosomal SNAREs form a structurally conserved SNARE complex and fuse liposomes with multiple topologies

2 October 2017

1 reference

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

2 October 2017

1 reference

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The SNARE protein family of Leishmania major

2 October 2017

1 reference

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SNAREs--engines for membrane fusion

2 October 2017

1 reference

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Identification of the yeast R-SNARE Nyv1p as a novel longin domain-containing protein

2 October 2017

1 reference

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Setting SNAREs in a different wood

2 October 2017

1 reference

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Identification of SNAP-47, a novel Qbc-SNARE with ubiquitous expression

2 October 2017

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Eukaryotic evolution, changes and challenges

2 October 2017

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Evolution of intraflagellar transport from coated vesicles and autogenous origin of the eukaryotic cilium.

2 October 2017

1 reference

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Application of phylogenetic networks in evolutionary studies

2 October 2017

1 reference

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Myosin domain evolution and the primary divergence of eukaryotes

2 October 2017

1 reference

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Complete genome sequence and lytic phase transcription profile of a Coccolithovirus

2 October 2017

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2 October 2017

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Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex

2 October 2017

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Components of coated vesicles and nuclear pore complexes share a common molecular architecture

2 October 2017

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The 1.2-megabase genome sequence of Mimivirus

2 October 2017

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

2 October 2017

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COP and clathrin-coated vesicle budding: different pathways, common approaches

2 October 2017

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The mechanisms of vesicle budding and fusion

2 October 2017

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

2 October 2017

1 reference

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A SNARE required for retrograde transport to the endoplasmic reticulum

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Use1p is a yeast SNARE protein required for retrograde traffic to the ER.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

The secretory apparatus of an ancient eukaryote: protein sorting to separate export pathways occurs before formation of transient Golgi-like compartments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

A new yeast endosomal SNARE related to mammalian syntaxin 8.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

The N-terminal domains of syntaxin 7 and vti1b form three-helix bundles that differ in their ability to regulate SNARE complex assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Rooting the eukaryote tree by using a derived gene fusion

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Three-dimensional structure of the amino-terminal domain of syntaxin 6, a SNAP-25 C homolog

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

An approximately unbiased test of phylogenetic tree selection

2 October 2017

1 reference

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Predicting the distribution, conservation, and functions of SNAREs and related proteins in fungi

2 October 2017

1 reference

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NEXUS: an extensible file format for systematic information

2 October 2017

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

2 October 2017

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The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa

2 October 2017

1 reference

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Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs

2 October 2017

1 reference

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CONSEL: for assessing the confidence of phylogenetic tree selection

2 October 2017

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Evolution of the Rab family of small GTP-binding proteins

2 October 2017

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An autoinhibitory mechanism for nonsyntaxin SNARE proteins revealed by the structure of Ykt6p

2 October 2017

1 reference

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A novel snare N-terminal domain revealed by the crystal structure of Sec22b

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

SNAREs and the specificity of membrane fusion

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Vam3p structure reveals conserved and divergent properties of syntaxins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

SNARE complexes--is there sufficient complexity for vesicle targeting specificity?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Interactions within the yeast t-SNARE Sso1p that control SNARE complex assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Structural analysis of the neuronal SNARE protein syntaxin-1A

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions

2 October 2017

1 reference

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Three-dimensional structure of the neuronal-Sec1-syntaxin 1a complex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Conserved structural features of the synaptic fusion complex: SNARE proteins reclassified as Q- and R-SNAREs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Three-dimensional structure of an evolutionarily conserved N-terminal domain of syntaxin 1A

2 October 2017

1 reference

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A novel SNARE complex implicated in vesicle fusion with the endoplasmic reticulum

2 October 2017

1 reference

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Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment

2 October 2017

1 reference

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A conserved domain is present in different families of vesicular fusion proteins: a new superfamily

2 October 2017

1 reference

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The rapid generation of mutation data matrices from protein sequences

2 October 2017

1 reference

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Novel syntaxin gene sequences from Giardia, Trypanosoma and algae: implications for the ancient evolution of the eukaryotic endomembrane system

2 October 2017

1 reference

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Reconstructing Early Events in Eukaryotic Evolution

11 July 2018

1 reference

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Molecular identification of 26 syntaxin genes and their assignment to the different trafficking pathways in Paramecium

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Increases in the number of SNARE genes parallels the rise of multicellularity among the green plants

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

A multigene family encoding R-SNAREs in the ciliate Paramecium tetraurelia.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Molecular and phylogenetic characterization of syntaxin genes from parasitic protozoa

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

IQPNNI: moving fast through tree space and stopping in time.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Small GTPases and the evolution of the eukaryotic cell

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

An ancestral secretory apparatus in the protozoan parasite Giardia intestinalis

24 September 2018

1 reference

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A genomic perspective on membrane compartment organization.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Extracting Sequence Motifs and the Phylogenetic Features of SNARE-Dependent Membrane Traffic

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1951749

Structural analysis of the interaction between the SNARE Tlg1 and Vps51

14 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17596510

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17596510

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/17596510

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1091/MBC.E07-03-0193

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17596510%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17596510%20AND%20SRC:MED&resulttype=core&format=json

1 January 2020

PubMed publication ID

17596510

1 reference