Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes (Q36079385)

12 August 2017

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes (English)

1 reference

12 August 2017

2

Mark Gerstein

1 reference

12 August 2017

Zhaolei Zhang

1

1 reference

PMC publication ID

203328

12 August 2017

language of work or name

English

0 references

publication date

1 September 2003

1 reference

12 August 2017

Nucleic Acids Research

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12 August 2017

31

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12 August 2017

18

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12 August 2017

5338-5348

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Initial sequencing and comparative analysis of the mouse genome

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Genome-scale compositional comparisons in eukaryotes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Initial sequencing and analysis of the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Disease-causing mutations in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Microsatellites in different eukaryotic genomes: survey and analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Human LINE retrotransposons generate processed pseudogenes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

2 October 2017

Vertebrate pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Patterns of nucleotide substitution in Drosophila and mammalian genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Comparison of DNA sequences with protein sequences.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Compositional differences within and between eukaryotic genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Structure and evolution of mammalian ribosomal proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Slipped-strand mispairing: a major mechanism for DNA sequence evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Doublet frequency analysis of fractionated vertebrate nuclear DNA.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Perspectives: evolution. Is bigger better in cricket?

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Wide variations in neighbor-dependent substitution rates.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=203328

Neighboring base effects on substitution rates in pseudogenes

23 September 2018

1 reference

12 December 2020

Evolutionary rates of insertion and deletion in noncoding nucleotide sequences of primates

1 reference

12 December 2020

Patterns and rates of indel evolution in processed pseudogenes from humans and murids

1 reference

12 December 2020

Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA

1 reference

12 December 2020

Changes in primary DNA sequence complexity influence the phenotypic consequences of mutations in human gene regulatory regions

1 reference

12 December 2020

Patterns of nucleotide substitution in pseudogenes and functional genes

1 reference

12 December 2020

Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG745

1 reference

12 August 2017

1 reference

PMC publication ID

203328

12 August 2017

PubMed publication ID

12954770

1 reference

PMC publication ID

203328