Adaptive local learning in sampling based motion planning for protein folding (Q36094963)

12 August 2017

Adaptive local learning in sampling based motion planning for protein folding (English)

1 reference

12 August 2017

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3

Nancy M Amato

1 reference

12 August 2017

Chinwe Ekenna

1

1 reference

PMC publication ID

4977477

12 August 2017

Shawna Thomas

series ordinal

2

1 reference

12 August 2017

1 August 2016

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12 August 2017

1 reference

12 August 2017

10 Suppl 2

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12 August 2017

49

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Improving Protein Fold Recognition by Deep Learning Networks

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Improving protein fold recognition by random forest.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

A self-learning algorithm for biased molecular dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Simulating protein motions with rigidity analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Fluorescence as a method to reveal structures and membrane-interactions of amyloidogenic proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Protein misfolding, functional amyloid, and human disease

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Hydrogen exchange mass spectrometry for the analysis of protein dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Computer-based redesign of a protein folding pathway

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

2 October 2017

x ray crystallography.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

2 October 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Experiment and theory highlight role of native state topology in SH3 folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

The hydrogen exchange core and protein folding.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

A statistical mechanical model for beta-hairpin kinetics.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Different folding transition states may result in the same native structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Fast folding of a prototypic polypeptide: the immunoglobulin binding domain of streptococcal protein G.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Spin glasses and the statistical mechanics of protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Folding protein alpha-carbon chains into compact forms by Monte Carlo methods

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

A simplified representation of protein conformations for rapid simulation of protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Prediction of protein secondary structure from circular dichroism using theoretically derived spectra

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Geometric algorithms for the conformational analysis of long protein loops

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

A path planning-based study of protein folding with a case study of hairpin formation in protein G and L.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Formation of hydrogen bonds precedes the rate-limiting formation of persistent structure in the folding of ACBP.

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Protein folding by restrained energy minimization and molecular dynamics

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4977477

Probabilistic roadmaps for path planning in high-dimensional configuration spaces

23 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-016-0297-9

Satisfying general proximity / similarity queries with metric trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-016-0297-9

An optimal algorithm for approximate nearest neighbor searching fixed dimensions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-016-0297-9

The Nonstochastic Multiarmed Bandit Problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-016-0297-9

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-016-0297-9

Submillisecond kinetics of protein folding

21 January 2018

1 reference

12 December 2020

The folding of an enzyme. V. H/2H exchange-nuclear magnetic resonance studies on the folding pathway of barnase: complementarity to and agreement with protein engineering studies

1 reference

12 December 2020

Minimalist protein model as a diagnostic tool for misfolding and aggregation

1 reference

12 December 2020

Using motion planning to study protein folding pathways

1 reference

12 December 2020

Structure of the hydrophobic core in the transition state for folding of chymotrypsin inhibitor 2: a critical test of the protein engineering method of analysis

1 reference

12 December 2020

10.1186/S12918-016-0297-9

Identifiers

DOI

1 reference

journals/bmcsb/EkennaTA16

12 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

4977477

12 August 2017

PubMed publication ID

27490494

1 reference

PMC publication ID

4977477