Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes (Q36112869)

12 August 2017

Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes (English)

1 reference

alternative mRNA splicing, via spliceosome

12 August 2017

0 references

1 reference

Sergei A Filichkin

1

1 reference

12 August 2017

Todd C Mockler

series ordinal

2

1 reference

12 August 2017

2 July 2012

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12 August 2017

1 reference

12 August 2017

7

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12 August 2017

20

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GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

An expanding universe of circadian networks in higher plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Antagonistic factors control the unproductive splicing of SC35 terminal intron.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Genomewide comparative analysis of alternative splicing in plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Nonsense mutations in close proximity to the initiation codon fail to trigger full nonsense-mediated mRNA decay.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Pre-mRNA splicing in the absence of an SR protein RS domain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Function of conserved domains of hnRNP A1 and other hnRNP A/B proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

A methyl transferase links the circadian clock to the regulation of alternative splicing

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

Regulation of plant developmental processes by a novel splicing factor

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family

2 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

Constitutive expression of CIR1 (RVE2) affects several circadian-regulated processes and seed germination in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

Nonsense-mediated mRNA decay (NMD) silences the accumulation of aberrant trypsin proteinase inhibitor mRNA in Nicotiana attenuata

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

Nonsense-mediated mRNA decay: target genes and functional diversification of effectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1745-6150-7-20

The molecular basis of temperature compensation in the Arabidopsis circadian clock

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403997

LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis

5 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22747664

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22747664

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Context analysis of termination codons in mRNA that are recognized by plant NMD

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22747664

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1745-6150-7-20

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

22747664

1 reference