Dynamical motions of lipids and a finite size effect in simulations of bilayers (Q36141768)

12 August 2017

Dynamical motions of lipids and a finite size effect in simulations of bilayers (English)

1 reference

12 August 2017

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Jeffery B Klauda

1

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12 August 2017

Bernard R Brooks

series ordinal

2

1 reference

12 August 2017

Richard W Pastor

series ordinal

3

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12 August 2017

language of work or name

English

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publication date

1 October 2006

1 reference

Journal of Chemical Physics

12 August 2017

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12 August 2017

125

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12 August 2017

14

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12 August 2017

144710

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Scalable molecular dynamics with NAMD

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Diffusion of cholesterol and its precursors in lipid membranes studied by 1H pulsed field gradient magic angle spinning NMR

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Molecular structure of the lecithin ripple phase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Phospholipid bilayer surface configuration probed quantitatively by (31)P field-cycling NMR.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

The range and shielding of dipole-dipole interactions in phospholipid bilayers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Gating of MscL Studied by Steered Molecular Dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Lipid bilayers, NMR relaxation, and computer simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Structure of lipid bilayers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Dynamical properties of phospholipid bilayers from computer simulation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Canonical dynamics: Equilibrium phase-space distributions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

On simulating lipid bilayers with an applied surface tension: periodic boundary conditions and undulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Structure of the ripple phase in lecithin bilayers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

A method for characterizing transition concertedness from polymer dynamics computer simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Translational diffusion of lipids in liquid crystalline phase phosphatidylcholine multibilayers. A comparison of experiment with theory.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Microscopic versus macroscopic diffusion in one-component fluid phase lipid bilayer membranes

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Molecular dynamics simulations of phospholipid bilayers: Influence of artificial periodicity, system size, and simulation time

2 July 2018

1 reference

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

Statistical clustering techniques for the analysis of long molecular dynamics trajectories: analysis of 2.2-ns trajectories of YPGDV.

21 January 2018

1 reference

Molecular dynamics investigation of the structural properties of phosphatidylethanolamine lipid bilayers

21 January 2018

1 reference

High-resolution 31p field cycling NMR as a probe of phospholipid dynamics

21 January 2018

1 reference

ART 2: self-organization of stable category recognition codes for analog input patterns.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077342

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

23 September 2018

1 reference

Molecular dynamics simulations at constant pressure and/or temperature

21 January 2018

1 reference

Molecular dynamics simulation of NMR relaxation rates and slow dynamics in lipid bilayers

21 January 2018

1 reference

System-Size Dependence of Diffusion Coefficients and Viscosities from Molecular Dynamics Simulations with Periodic Boundary Conditions

21 January 2018

1 reference

An ab Initio Study on the Torsional Surface of Alkanes and Its Effect on Molecular Simulations of Alkanes and a DPPC Bilayer

21 January 2018

1 reference

Quasielastic neutron scattering measurements of fast local translational diffusion of lipid molecules in phospholipid bilayers

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17042634

12 December 2020

inferred from PubMed ID database lookup

Clarification of the ripple phase of lecithin bilayers using fully hydrated, aligned samples

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17042634

12 December 2020

inferred from PubMed ID database lookup

Molecular dynamics investigation of dynamical properties of phosphatidylethanolamine lipid bilayers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17042634

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1063/1.2354486

1 reference

release_4y4jaounsjecjb2xaznmguapim

12 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4y4jaounsjecjb2xaznmguapim

24 November 2022

mapped directly with Wikidata item

1 reference

12 August 2017

PubMed publication ID

17042634

1 reference