Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information. (Q36372981)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530449%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

title

Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information (English)

1 reference

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19 December 2019

1

1 reference

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19 December 2019

author name string

Alexander P Lifanov

series ordinal

2

1 reference

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19 December 2019

Anna G Nazina

series ordinal

3

1 reference

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19 December 2019

Dmitri A Papatsenko

series ordinal

4

1 reference

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19 December 2019

language of work or name

English

0 references

publication date

1 October 2003

1 reference

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19 December 2019

published in

Nucleic Acids Research

1 reference

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19 December 2019

volume

31

1 reference

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19 December 2019

issue

20

1 reference

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19 December 2019

page(s)

6016-6026

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530449%20AND%20SRC:MED&resulttype=core&format=json

Homotypic regulatory clusters in Drosophila.

19 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

TRANSFAC: transcriptional regulation, from patterns to profiles

30 September 2017

1 reference

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Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo

30 September 2017

1 reference

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Predicting transcription factor synergism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Analysis and function of transcriptional regulatory elements: insights from Drosophila

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Differential activity by DNA-induced quarternary structures of POU transcription factors.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

TRANSCompel: a database on composite regulatory elements in eukaryotic genes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Physical interaction of the activator protein-1 factors c-Fos and c-Jun with Cbfa1 for collagenase-3 promoter activation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Identifying regulatory networks by combinatorial analysis of promoter elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

A predictive model for regulatory sequences directing liver-specific transcription.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Precise arrangement of factor-binding sites is required for murine CD4 promoter function

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

The orientation of the AP-1 heterodimer on DNA strongly affects transcriptional potency.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Transcription regulatory region analysis using signal detection and fuzzy clustering

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Multiple DNA elements for sterol regulatory element-binding protein and NF-Y are responsible for sterol-regulated transcription of the genes for human 3-hydroxy-3-methylglutaryl coenzyme A synthase and squalene synthase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Multiple modes of dorsal-bHLH transcriptional synergy in the Drosophila embryo.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Regulation of even-skipped stripe 2 in the Drosophila embryo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Long-range correlations in nucleotide sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Interactions of a DNA-bound transcriptional activator with the TBP-TFIIA-TFIIB-promoter quaternary complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

From gradients to stripes in Drosophila embryogenesis: filling in the gaps

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Cooperative DNA-binding by Bicoid provides a mechanism for threshold-dependent gene activation in the Drosophila embryo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Identification of regulatory regions which confer muscle-specific gene expression.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Transcription factor interactions: selectors of positive or negative regulation from a single DNA element.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Computational analysis of composite regulatory elements.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Control of a genetic regulatory network by a selector gene.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219477

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14530449

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG799

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530449%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530449%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

PubMed publication ID

14530449

1 reference