Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations (Q36639010)

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scientific article published on February 2002

Language	Label	Description	Also known as
English	Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations	scientific article published on February 2002

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Rapid structural fluctuations of the free HIV protease flaps in solution: relationship to crystal structures and comparison with predictions of dynamics calculations (English)

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

crystal structure

1 reference

based on heuristic

inferred from title

author name string

Darón I Freedberg

1

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Rieko Ishima

2

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Jaison Jacob

3

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Yun-Xing Wang

4

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Irina Kustanovich

5

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

John M Louis

6

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Dennis A Torchia

7

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

publication date

1 February 2002

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Protein Science

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

2

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

221-232

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

Curling of flap tips in HIV-1 protease as a mechanism for substrate entry and tolerance of drug resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

1.9 A x-ray study shows closed flap conformation in crystals of tethered HIV-1 PR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Protein dynamics from NMR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Domain flexibility in retroviral proteases: structural implications for drug resistant mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Structure-based inhibitors of HIV-1 protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

X-ray analysis of HIV-1 proteinase at 2.7 A resolution confirms structural homology among retroviral enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Domain communication in the dynamical structure of human immunodeficiency virus 1 protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

The three-dimensional structure of the aspartyl protease from the HIV-1 isolate BRU

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

30 September 2017

Reaction path and free energy calculations of the transition between alternate conformations of HIV-1 protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

28 June 2018

Regulation of autoproteolysis of the HIV-1 and HIV-2 proteases with engineered amino acid substitutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

28 June 2018

Inhibitor binding to the Phe53Trp mutant of HIV-1 protease promotes conformational changes detectable by spectrofluorometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

28 June 2018

Direct measurements of the dissociation-rate constant for inhibitor-enzyme complexes via the T1 rho and T2 (CPMG) methods.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

28 June 2018

The HIV-1 protease as enzyme and substrate: mutagenesis of autolysis sites and generation of a stable mutant with retained kinetic properties.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

28 June 2018

Characterization of thermotropic state changes in myosin subfragment-1 and heavy meromyosin by UV difference spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

28 June 2018

Targeting the dimerization interface for irreversible inhibition of HIV-1 protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

20 September 2018

Flap opening in HIV-1 protease simulated by 'activated' molecular dynamics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

20 September 2018

Flexibility and function in HIV-1 protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

20 September 2018

Long-range motional restrictions in a multidomain zinc-finger protein from anisotropic tumbling.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

20 September 2018

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1110%2FPS.33202

21 January 2018

Correlation between3hJNC‘and Hydrogen Bond Length in Proteins

1 reference

https://api.crossref.org/works/10.1110%2FPS.33202

21 January 2018

The importance of not saturating water in protein NMR. Application to sensitivity enhancement and NOE measurements

1 reference

https://api.crossref.org/works/10.1110%2FPS.33202

21 January 2018

Measurement of 3hJNC′ connectivities across hydrogen bonds in a 30 kDa protein

2 references

https://api.crossref.org/works/10.1110%2FPS.33202

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/11790832

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins

1 reference

https://api.crossref.org/works/10.1110%2FPS.33202

21 January 2018

Direct Measurement of15N Chemical Shift Anisotropy in Solution

1 reference

https://api.crossref.org/works/10.1110%2FPS.33202

21 January 2018

A short recollection on the paper entitled “A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams” by D.S. Garrett, R. Powers, A.M. Gronenborn, and G.M. Clore [

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2373438

4 December 2018

A combined quantum/classical molecular dynamics study of the catalytic mechanism of HIV protease

1 reference

https://pubmed.ncbi.nlm.nih.gov/11790832

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Anisotropic rotational diffusion of perdeuterated HIV protease from 15N NMR relaxation measurements at two magnetic fields

1 reference

https://pubmed.ncbi.nlm.nih.gov/11790832

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flap opening and dimer-interface flexibility in the free and inhibitor-bound HIV protease, and their implications for function

1 reference

https://pubmed.ncbi.nlm.nih.gov/11790832

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two-step binding mechanism for HIV protease inhibitors

1 reference

https://pubmed.ncbi.nlm.nih.gov/11790832

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular dynamics simulation of HIV-1 protease in a crystalline environment and in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/11790832

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1110/PS.33202

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 August 2017

ResearchGate publication ID

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