Codon bias in Escherichia coli: the influence of codon context on mutation and selection. (Q36849562)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9060435%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

title

Codon bias in Escherichia coli: the influence of codon context on mutation and selection (English)

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1 November 2019

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2

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1 November 2019

author name string

O G Berg

series ordinal

1

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1 November 2019

language of work or name

English

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publication date

1 April 1997

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1 November 2019

published in

Nucleic Acids Research

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1 November 2019

volume

25

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1 November 2019

issue

7

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1 November 2019

page(s)

1397-1404

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Selection intensity for codon bias and the effective population size of Escherichia coli

1 November 2019

cites work

1 reference

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Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

29 September 2017

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Very short patch repair: reducing the cost of cytosine methylation

29 September 2017

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29 September 2017

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29 September 2017

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Selection intensity for codon bias

29 September 2017

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29 September 2017

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Translation of the sequence AGG-AGG yields 50% ribosomal frameshift

29 September 2017

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29 September 2017

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Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli

29 September 2017

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29 September 2017

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29 September 2017

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The effect of context on synonymous codon usage in genes with low codon usage bias

29 September 2017

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The selection-mutation-drift theory of synonymous codon usage

29 September 2017

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DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coli genome

29 September 2017

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Statistical evaluation and biological interpretation of non-random abundance in the E. coli K-12 genome of tetra- and pentanucleotide sequences related to VSP DNA mismatch repair

29 September 2017

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Molecular basis of base substitution hotspots in Escherichia coli

29 September 2017

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Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation

29 September 2017

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The close proximity of Escherichia coli genes: consequences for stop codon and synonymous codon use.

29 September 2017

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Synonymous substitution-rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure

27 June 2018

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Sense codons are found in specific contexts.

27 June 2018

1 reference

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Codon contexts in enterobacterial and coliphage genes.

27 June 2018

1 reference

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Use of tRNA suppressors to probe regulation of Escherichia coli release factor 2.

27 June 2018

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Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate.

27 June 2018

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Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

27 June 2018

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A possible relationship between VSP mismatch repair and gene expression level.

5 September 2018

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Growth and translation elongation rate are sensitive to the concentration of EF-Tu

5 September 2018

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Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli.

5 September 2018

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Compositional heterogeneity of the Escherichia coli genome: a role for VSP repair?

5 September 2018

1 reference

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Substrate preferences of Vsr DNA mismatch endonuclease and their consequences for the evolution of the Escherichia coli K-12 genome.

5 September 2018

1 reference

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Growth-rate-dependent Accumulation of Twelve tRNA Species in Escherichia coli

5 September 2018

1 reference

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Codon usage and intragenic position

5 September 2018

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12 December 2020

Selection of laboratory wild-type phenotype from natural isolates of Escherichia coli in chemostats

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12 December 2020

Does very short patch (VSP) repair efficiency vary in relation to gene expression levels?

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12 December 2020

Costs of accuracy determined by a maximal growth rate constraint

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12 December 2020

Identifiers

DOI

10.1093/NAR/25.7.1397

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9060435%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9060435%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

PubMed publication ID

9060435

1 reference