PrimerHunter: a primer design tool for PCR-based virus subtype identification. (Q37181487)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19264805%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

title

PrimerHunter: a primer design tool for PCR-based virus subtype identification (English)

1 reference

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22 January 2020

1 reference

1

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22 January 2020

Ion I. Mandoiu

5

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22 January 2020

author name string

Dipu Mohan Kumar

2

1 reference

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22 January 2020

Edward Hemphill

3

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22 January 2020

Mazhar Khan

4

1 reference

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22 January 2020

Craig E Nelson

6

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22 January 2020

language of work or name

English

0 references

publication date

5 March 2009

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22 January 2020

published in

Nucleic Acids Research

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22 January 2020

volume

37

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22 January 2020

issue

8

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22 January 2020

page(s)

2483-2492

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The influenza virus resource at the National Center for Biotechnology Information

22 January 2020

cites work

1 reference

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6 September 2017

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Clustal W and Clustal X version 2.0

6 September 2017

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QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments

6 September 2017

1 reference

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Comprehensive DNA signature discovery and validation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Review of rapid molecular diagnostic tools for avian influenza virus

6 September 2017

1 reference

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Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments

6 September 2017

1 reference

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Degenerate primer design via clustering.

6 September 2017

1 reference

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OligoSpawn: a software tool for the design of overgo probes from large unigene datasets.

6 September 2017

1 reference

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The thermodynamics of DNA structural motifs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Limitations of TaqMan PCR for detecting divergent viral pathogens illustrated by hepatitis A, B, C, and E viruses and human immunodeficiency virus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Primer3 on the WWW for general users and for biologist programmers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

TreeView: an application to display phylogenetic trees on personal computers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Thermodynamics of internal C.T mismatches in DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Enhancements and modifications of primer design program Primer3.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

PROBEmer: A web-based software tool for selecting optimal DNA oligos

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Efficient enumeration of phylogenetically informative substrings

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

The degenerate primer design problem.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Development of multiplex rt-PCR assays for rapid detection and subtyping of influenza type A viruses from clinical specimens.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

A multiplex real-time RT-PCR for detection and identification of influenza virus types A and B and subtypes H5 and N1.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

A multiplex RT-PCR for detection of type A influenza virus and differentiation of avian H5, H7, and H9 hemagglutinin subtypes

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

DNA-BAR: distinguisher selection for DNA barcoding.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

A fractional programming approach to efficient DNA melting temperature calculation.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Primaclade--a flexible tool to find conserved PCR primers across multiple species.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Comparison of different melting temperature calculation methods for short DNA sequences

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Development of Multiplex Real-Time RT-PCR as a Diagnostic Tool for Avian Influenza

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

A guide to the design and use of mismatched and degenerate primers.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677861

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

3 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19264805

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19264805

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19264805

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP073

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19264805%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19264805%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

PubMed publication ID

19264805

1 reference