FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles (Q37182134)

18 August 2017

FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles (English)

1 reference

18 August 2017

Dina Schneidman-Duhovny

1

Dina Schneidman-Duhovny

0 references

Andrej Šali

4

Andrej Sali

0 references

Michal Hammel

Michal Hammel

2

0 references

John A. Tainer

John A Tainer

3

0 references

language of work or name

English

0 references

publication date

5 May 2016

1 reference

18 August 2017

Nucleic Acids Research

1 reference

18 August 2017

44

1 reference

18 August 2017

W1

1 reference

18 August 2017

W424-9

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

18 August 2017

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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High-throughput SAXS for the characterization of biomolecules in solution: a practical approach

6 September 2017

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Structural insights into the interaction of IL-33 with its receptors

6 September 2017

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Accurate SAXS profile computation and its assessment by contrast variation experiments

6 September 2017

1 reference

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Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

6 September 2017

1 reference

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Accurate assessment of mass, models and resolution by small-angle scattering

6 September 2017

1 reference

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Super-resolution in solution X-ray scattering and its applications to structural systems biology.

6 September 2017

1 reference

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A method for integrative structure determination of protein-protein complexes

6 September 2017

1 reference

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Integrative structural modeling with small angle X-ray scattering profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Validation of macromolecular flexibility in solution by small-angle X-ray scattering (SAXS).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Biomolecules in the computer: Jmol to the rescue

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Macromolecular docking restrained by a small angle X-ray scattering profile

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

FoXS: a web server for rapid computation and fitting of SAXS profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Mechanism of DNA substrate recognition by the mammalian DNA repair enzyme, Polynucleotide Kinase.

6 September 2017

1 reference

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Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

PatchDock and SymmDock: servers for rigid and symmetric docking

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Global rigid body modeling of macromolecular complexes against small-angle scattering data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Determination of domain structure of proteins from X-ray solution scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

6 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Comparative protein modelling by satisfaction of spatial restraints

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Accounting for observed small angle X-ray scattering profile in the protein-protein docking server ClusPro

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

pyDockSAXS: protein-protein complex structure by SAXS and computational docking

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Optimized atomic statistical potentials: assessment of protein interfaces and loops

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Sub-angstrom modeling of complexes between flexible peptides and globular proteins.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

A path planning approach for computing large-amplitude motions of flexible molecules

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4987932

Branch-and-Bound Methods: A Survey

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKW389

Using motion planning to study protein folding pathways

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27151198

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKW389

1 reference

journals/nar/Schneidman-Duhovny16

18 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

4987932

18 August 2017

PubMed publication ID

27151198

1 reference

PMC publication ID

4987932