The mechanism of ATP-dependent RNA unwinding by DEAD box proteins (Q37595518)

21 August 2017

1 reference

title

The mechanism of ATP-dependent RNA unwinding by DEAD box proteins (English)

1 reference

21 August 2017

Manuel Hilbert

1

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21 August 2017

Anne R Karow

series ordinal

2

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21 August 2017

Dagmar Klostermeier

series ordinal

3

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21 August 2017

publication date

1 December 2009

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21 August 2017

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21 August 2017

volume

390

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21 August 2017

issue

12

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21 August 2017

page(s)

1237-1250

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Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras

21 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The exon junction core complex is locked onto RNA by inhibition of eIF4AIII ATPase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

A conserved phenylalanine of motif IV in superfamily 2 helicases is required for cooperative, ATP-dependent binding of RNA substrates in DEAD-box proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure of yeast initiation factor 4A, a DEAD-box RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

DEAD-box proteins can completely separate an RNA duplex using a single ATP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure and functional analysis of DEAD-box protein Dhh1p

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The DEXD/H-box RNA Helicase DDX19 Is Regulated by an -Helical Switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Reverse gyrase: a helicase-like domain and a type I topoisomerase in the same polypeptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The DEAD-box protein family of RNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Do DEAD-box proteins promote group II intron splicing without unwinding RNA?

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The reverse gyrase helicase-like domain is a nucleotide-dependent switch that is attenuated by the topoisomerase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Escherichia coli DbpA is a 3' --> 5' RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Comparative characterization of two DEAD-box RNA helicases in superfamily II: human translation-initiation factor 4A and hepatitis C virus non-structural protein 3 (NS3) helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Protein displacement by DExH/D "RNA helicases" without duplex unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Solution and crystal structures of mRNA exporter Dbp5p and its interaction with nucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Human DEAD-box ATPase DDX3 shows a relaxed nucleoside substrate specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Differential RNA-dependent ATPase activities of four rRNA processing yeast DEAD-box proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Visualization of unwinding activity of duplex RNA by DbpA, a DEAD box helicase, at single-molecule resolution by atomic force microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure of conserved domains 1 and 2 of the human DEAD-box helicase DDX3X in complex with the mononucleotide AMP

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Intrinsic RNA binding by the eukaryotic initiation factor 4F depends on a minimal RNA length but not on the m7G cap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

A novel dimerization motif in the C-terminal domain of the Thermus thermophilus DEAD box helicase Hera confers substantial flexibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Interaction between the NH2-terminal domain of eIF4A and the central domain of eIF4G modulates RNA-stimulated ATPase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Evolution and classification of P-loop kinases and related proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Dead-box proteins: a family affair--active and passive players in RNP-remodeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

21 January 2018

Birth of the D-E-A-D box

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Substrate-dependent targeting of eukaryotic translation initiation factor 4A by pateamine A: negation of domain-linker regulation of activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Autoinhibition of human dicer by its internal helicase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Hera from Thermus thermophilus: the first thermostable DEAD-box helicase with an RNase P protein motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Structural and functional analysis of the interaction between the nucleoporin Nup214 and the DEAD-box helicase Ddx19

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase center in 23S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Mechanism of ATP turnover inhibition in the EJC

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Structural basis for the enhancement of eIF4A helicase activity by eIF4G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Solution structure of the GUCT domain from human RNA helicase II/Gu beta reveals the RRM fold, but implausible RNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Effects of oligonucleotide length and atomic composition on stimulation of the ATPase activity of translation initiation factor elF4A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Adenosine 5'-O-(3-thio)triphosphate (ATPgammaS) is a substrate for the nucleotide hydrolysis and RNA unwinding activities of eukaryotic translation initiation factor eIF4A

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Translocation and unwinding mechanisms of RNA and DNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Studies of a positive supercoiling machine. Nucleotide hydrolysis and a multifunctional "latch" in the mechanism of reverse gyrase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Investigating the role of the latch in the positive supercoiling mechanism of reverse gyrase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Further characterization of the helicase activity of eIF4A. Substrate specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

eIF4A: the godfather of the DEAD box helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Interactions between eIF4AI and its accessory factors eIF4B and eIF4H

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure and nucleotide binding of the Thermus thermophilus RNA helicase Hera N-terminal domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystallization and preliminary characterization of the Thermus thermophilus RNA helicase Hera C-terminal domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The P-loop--a common motif in ATP- and GTP-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

D-E-A-D protein family of putative RNA helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Structure and mechanism of helicases and nucleic acid translocases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Hydrodynamic characterization of the DEAD-box RNA helicase DbpA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The Newly Identified Q Motif of DEAD Box Heicases IS Involved in Adenine Recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The universal protein resource (UniProt)

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The Bacillus subtilis RNA helicase YxiN is distended in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

Helicases: amino acid sequence comparisons and structure-function relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The DExH protein NPH-II is a processive and directional motor for unwinding RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2009.135

21 January 2018

Identifiers

DOI

10.1515/BC.2009.135

1 reference

21 August 2017

1 reference