Genome sequencing and population genomics in non-model organisms (Q38153983)

29 August 2017

title

Genome sequencing and population genomics in non-model organisms (English)

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29 August 2017

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1

Hans Ellegren

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29 August 2017

publication date

17 October 2013

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Trends in Ecology & Evolution

29 August 2017

number of pages

13

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based on heuristic

inferred from page(s)

published in

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29 August 2017

volume

29

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29 August 2017

issue

1

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29 August 2017

page(s)

51-63

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Reference genome sequence of the model plant Setaria

29 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Analysis of the bread wheat genome using whole-genome shotgun sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The tomato genome sequence provides insights into fleshy fruit evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genomic landscape of species divergence in Ficedula flycatchers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genomic basis of adaptive evolution in threespine sticklebacks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The bonobo genome compared with the chimpanzee and human genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The yak genome and adaptation to life at high altitude

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Insights into bilaterian evolution from three spiralian genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

A heterozygous moth genome provides insights into herbivory and detoxification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Comparative analysis of bat genomes provides insight into the evolution of flight and immunity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The oyster genome reveals stress adaptation and complexity of shell formation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genomic diversity and evolution of the head crest in the rock pigeon

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

7 January 2021

The genome of a songbird

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Hybrid error correction and de novo assembly of single-molecule sequencing reads

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Recombination rate variation in closely related species.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Biased gene conversion and the evolution of mammalian genomic landscapes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Phylogenetic patterns of GC-biased gene conversion in placental mammals and the evolutionary dynamics of recombination landscapes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Evolutionary stasis: the stable chromosomes of birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Direct and indirect consequences of meiotic recombination: implications for genome evolution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

An integrated encyclopedia of DNA elements in the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Conservation and functional element discovery in 20 angiosperm plant genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Human SNPs reveal no evidence of frequent positive selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genome wide analyses reveal little evidence for adaptive evolution in many plant species.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Adaptive protein evolution in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The rate of molecular adaptation in a changing environment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Population genomics: genome-wide sampling of insect populations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The power and promise of population genomics: from genotyping to genome typing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genotyping-by-sequencing in ecological and conservation genomics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genotype-phenotype mapping in a post-GWAS world.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The n = 1 constraint in population genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Detecting selective sweeps from pooled next-generation sequencing samples.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

A framework for variation discovery and genotyping using next-generation DNA sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

A beginners guide to SNP calling from high-throughput DNA-sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genotype and SNP calling from next-generation sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Analyses of pig genomes provide insight into porcine demography and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Strong signatures of selection in the domestic pig genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genome-wide genetic changes during modern breeding of maize

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Comparative population genomics of maize domestication and improvement

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

A map of rice genome variation reveals the origin of cultivated rice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genomic scans for selective sweeps using SNP data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Understanding the origin of species with genome-scale data: modelling gene flow

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Approximate Bayesian Computation in Evolution and Ecology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Comparative and demographic analysis of orang-utan genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Inference of human population history from individual whole-genome sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Estimating variable effective population sizes from multiple genomes: a sequentially markov conditional sampling distribution approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genomics of speciation-with-gene-flow

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genomic divergence during speciation: causes and consequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Insights into hominid evolution from the gorilla genome sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The Norway spruce genome sequence and conifer genome evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Reference-assisted chromosome assembly

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

PAML 4: phylogenetic analysis by maximum likelihood

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Adaptive protein evolution at the Adh locus in Drosophila

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Estimation of the Neutrality Index

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genome of the Chinese tree shrew

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genome of the green anole lizard and a comparative analysis with birds and mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The African coelacanth genome provides insights into tetrapod evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The monarch butterfly genome yields insights into long-distance migration

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The genomes of four tapeworm species reveal adaptations to parasitism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Genome sequence and analysis of the tuber crop potato

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The draft genome of a diploid cotton Gossypium raimondii

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The draft genome of sweet orange (Citrus sinensis)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

Insights into salt tolerance from the genome of Thellungiella salsuginea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2013.09.008

10.1016/J.TREE.2013.09.008

7 January 2021

Identifiers

DOI

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29 August 2017

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