Epistatic relationships reveal the functional organization of yeast transcription factors (Q38339973)

2 September 2017

Epistatic relationships reveal the functional organization of yeast transcription factors (English)

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2 September 2017

6

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2 September 2017

5

Jack Greenblatt

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2 September 2017

9

Nevan J Krogan

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2 September 2017

Jiashun Zheng

1

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2 September 2017

Joris J Benschop

2

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2 September 2017

Michael Shales

3

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2 September 2017

Patrick Kemmeren

4

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2 September 2017

Frank Holstege

7

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2 September 2017

Hao Li

8

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2 September 2017

1 October 2010

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Molecular Systems Biology

2 September 2017

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2 September 2017

6

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2 September 2017

420

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describes a project that uses

2 September 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/2990640

based on heuristic

inferred from PubMed Central ID database lookup

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Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

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Diversity and complexity in DNA recognition by transcription factors

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Functional organization of the S. cerevisiae phosphorylation network

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6 September 2017

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

6 September 2017

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A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing

6 September 2017

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Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

6 September 2017

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A comprehensive strategy enabling high-resolution functional analysis of the yeast genome.

6 September 2017

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Coupling and coordination in gene expression processes: a systems biology view

6 September 2017

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6 September 2017

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Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

6 September 2017

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Genome-wide mapping of in vivo protein-DNA interactions

6 September 2017

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Genetic reconstruction of a functional transcriptional regulatory network

6 September 2017

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Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

6 September 2017

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Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions

6 September 2017

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Identifying transcription factor functions and targets by phenotypic activation

6 September 2017

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Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

6 September 2017

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A strategy for extracting and analyzing large-scale quantitative epistatic interaction data

6 September 2017

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DNA microarray technologies for measuring protein-DNA interactions

6 September 2017

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Yeast Gal4: a transcriptional paradigm revisited

6 September 2017

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

6 September 2017

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

6 September 2017

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Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

6 September 2017

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

6 September 2017

1 reference

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Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

6 September 2017

1 reference

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

6 September 2017

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Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

6 September 2017

1 reference

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Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast

6 September 2017

1 reference

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Systematic interpretation of genetic interactions using protein networks

6 September 2017

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Logic functions of the genomic cis-regulatory code

6 September 2017

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Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence

6 September 2017

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Transcriptional regulatory code of a eukaryotic genome

6 September 2017

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The unfolded protein response represses differentiation through the RPD3-SIN3 histone deacetylase

6 September 2017

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SWRred not shaken; mixing the histones

6 September 2017

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Global mapping of the yeast genetic interaction network

6 September 2017

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Activation of the RAS/cyclic AMP pathway suppresses a TOR deficiency in yeast

6 September 2017

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On schemes of combinatorial transcription logic

6 September 2017

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Transcriptional regulatory networks in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Transmitting the signal of excess nitrogen in Saccharomyces cerevisiae from the Tor proteins to the GATA factors: connecting the dots

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Systematic genetic analysis with ordered arrays of yeast deletion mutants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

The GATA transcription factors GLN3 and GAT1 link TOR to salt stress in Saccharomyces cerevisiae.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Nitrogen catabolite repression of DAL80 expression depends on the relative levels of Gat1p and Ure2p production in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Feasting, fasting and fermenting. Glucose sensing in yeast and other cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

A co-activator of nitrogen-regulated transcription in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Met31p and Met32p, two related zinc finger proteins, are involved in transcriptional regulation of yeast sulfur amino acid metabolism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Regulation of nitrogen assimilation in Saccharomyces cerevisiae: roles of the URE2 and GLN3 genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Regulation of arginine biosynthesis in Saccharomyces cerevisiae: isolation of a cis-dominant, constitutive mutant for ornithine carbamoyltransferase synthesis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Synthetic enhancement in gene interaction: a genetic tool come of age.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Quantitative genetic interactions reveal biological modularity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Adaptable gene-specific dye bias correction for two-channel DNA microarrays

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Evolution of eukaryotic transcription circuits

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Evolution of alternative transcriptional circuits with identical logic

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

The design of transcription-factor binding sites is affected by combinatorial regulation

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

Genomics and array technology

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2990640

TATA-dependent and TATA-independent transcription at the HIS4 gene of yeast

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FMSB.2010.77

21 January 2018

Identifiers

DOI

10.1038/MSB.2010.77

1 reference

2 September 2017

1 reference

2 September 2017

PubMed publication ID

20959818

1 reference