A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics (Q38510457)

3 September 2017

title

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics (English)

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6

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7

Matthias Mann

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Jürgen Cox

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Maximiliane Hilger

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3

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Nagarjuna Nagaraj

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4

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Matthias Selbach

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5

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language of work or name

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1 January 2009

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3 September 2017

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volume

4

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issue

5

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page(s)

698-705

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Mass spectrometry-based proteomics

3 September 2017

cites work

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On the proper use of mass accuracy in proteomics.

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Precision proteomics: the case for high resolution and high mass accuracy

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Performance evaluation of a hybrid linear ion trap/orbitrap mass spectrometer

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Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

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https://api.crossref.org/works/10.1038%2FNPROT.2009.36

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

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https://api.crossref.org/works/10.1038%2FNPROT.2009.36

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

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https://api.crossref.org/works/10.1038%2FNPROT.2009.36

Functional and quantitative proteomics using SILAC

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

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Combined use of RNAi and quantitative proteomics to study gene function in Drosophila

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Widespread changes in protein synthesis induced by microRNAs

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https://api.crossref.org/works/10.1038%2FNPROT.2009.36

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

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Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry

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Is proteomics the new genomics?

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The ubiquitin-proteasome system is a key component of the SUMO-2/3 cycle

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Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions

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Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis

31 March 2020

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Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

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High confidence determination of specific protein-protein interactions using quantitative mass spectrometry

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Probability-based protein identification by searching sequence databases using mass spectrometry data

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The International Protein Index: an integrated database for proteomics experiments

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The universal protein resource (UniProt)

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

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Efficiency of database search for identification of mutated and modified proteins via mass spectrometry

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How much peptide sequence information is contained in ion trap tandem mass spectra?

31 March 2020

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Gene ontology: tool for the unification of biology

31 March 2020

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The Pfam protein families database

31 March 2020

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KEGG for linking genomes to life and the environment

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Identifiers

DOI

10.1038/NPROT.2009.36

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Dimensions Publication ID

3 September 2017

1016965563

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