Function of the conserved S1 and KH domains in polynucleotide phosphorylase (Q39362009)

11 September 2017

Function of the conserved S1 and KH domains in polynucleotide phosphorylase (English)

1 reference

11 September 2017

Leigh M Stickney

1

1 reference

11 September 2017

Janet S Hankins

series ordinal

2

1 reference

11 September 2017

Xin Miao

series ordinal

3

1 reference

11 September 2017

George A Mackie

series ordinal

4

1 reference

11 September 2017

language of work or name

English

0 references

publication date

1 November 2005

1 reference

11 September 2017

Journal of Bacteriology

1 reference

11 September 2017

187

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11 September 2017

21

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11 September 2017

7214-7221

1 reference

Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Nucleic acid recognition by OB-fold proteins

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

OB-fold domains: a snapshot of the evolution of sequence, structure and function

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

PNPase autocontrols its expression by degrading a double-stranded structure in the pnp mRNA leader

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

An extended RNA binding surface through arrayed S1 and KH domains in transcription factor NusA

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Emerging features of mRNA decay in bacteria

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Domain structure and function of dynamin probed by limited proteolysis.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

mRNA degradation. A tale of poly(A) and multiprotein machines.

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Study on the structure-function relationship of polynucleotide phosphorylase: model of a proteolytic degraded polynucleotide phosphorylase

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure

11 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

A mutation in polynucleotide phosphorylase from Escherichia coli impairing RNA binding and degradosome stability

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Mechanism and control of transcription initiation in prokaryotes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Modulation of yersinia type three secretion system by the S1 domain of polynucleotide phosphorylase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

A protein complex mediating mRNA degradation in Escherichia coli.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Degradation of Escherichia coli polynucleotide phosphorylase by E. coli endogenous proteases and by trypsin

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Overexpression and purification of untagged polynucleotide phosphorylases

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Two distinct regions on the surface of an RNA-binding domain are crucial for RNase E function

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1272994

Preparation of Escherichia coli Rne protein and reconstitution of RNA degradosome

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16237005

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Degradation of mRNA in Escherichia coli: an old problem with some new twists

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16237005

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A novel mutation in the KH domain of polynucleotide phosphorylase affects autoregulation and mRNA decay in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16237005

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.187.21.7214-7221.2005

1 reference

11 September 2017

1 reference

11 September 2017

PubMed publication ID

16237005

1 reference