Histone Post-Translational Modifications and Nucleosome Organisation in Transcriptional Regulation: Some Open Questions (Q39390193)

11 September 2017

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title

Histone Post-Translational Modifications and Nucleosome Organisation in Transcriptional Regulation: Some Open Questions (English)

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11 September 2017

Josefa Castillo

1

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11 September 2017

Gerardo López-Rodas

series ordinal

2

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11 September 2017

Luis Franco

series ordinal

3

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11 September 2017

language of work or name

English

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publication date

22 June 2017

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Advances in Experimental Medicine and Biology

11 September 2017

published in

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Selective Recognition of H3.1K36 Dimethylation/H4K16 Acetylation Facilitates the Regulation of All-trans-retinoic Acid (ATRA)-responsive Genes by Putative Chromatin Reader ZMYND8.

11 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The Taf14 YEATS domain is a reader of histone crotonylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Epigenetic bivalent marking is permissive to the synergy of HDAC and PARP inhibitors on TXNIP expression in breast cancer cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Core histones are glutaminyl substrates for tissue transglutaminase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Transglutaminase is a therapeutic target for oxidative stress, excitotoxicity and stroke: a new epigenetic kid on the CNS block

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

An operational definition of epigenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Catalytic mechanism of a MYST family histone acetyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Metabolic Enzymes Moonlighting in the Nucleus: Metabolic Regulation of Gene Transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Lysine propionylation and butyrylation are novel post-translational modifications in histones

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Molecular characterization of propionyllysines in non-histone proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Chromatin remodeling and neuronal response: multiple signaling pathways induce specific histone H3 modifications and early gene expression in hippocampal neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

A brief review of nucleosome structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Stacked thin layers of metaphase chromatin explain the geometry of chromosome rearrangements and banding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Coupling of T cell receptor specificity to natural killer T cell development by bivalent histone H3 methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Sirt5 is a NAD-dependent protein lysine demalonylase and desuccinylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Metabolic regulation of histone post-translational modifications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Solenoidal model for superstructure in chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

A Subset of Human Bromodomains Recognizes Butyryllysine and Crotonyllysine Histone Peptide Modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Sequential chromatin immunoprecipitation protocol: ChIP-reChIP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Dense chromatin plates in metaphase chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Concise review: epigenetic mechanisms contribute to pluripotency and cell lineage determination of embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

N-lysine propionylation controls the activity of propionyl-CoA synthetase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Chromatin organization - the 30 nm fiber

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The nexus of chromatin regulation and intermediary metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Chromatin remodeling and bivalent histone modifications in embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Dynamic and flexible H3K9me3 bridging via HP1β dimerization establishes a plastic state of condensed chromatin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

ING4 Mediates Crosstalk between Histone H3 K4 Trimethylation and H3 Acetylation to Attenuate Cellular Transformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Analysis of nucleosome positioning using a nucleosome-scanning assay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

SIRT3 functions in the nucleus in the control of stress-related gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Metabolism and epigenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

N-formylation of lysine in histone proteins as a secondary modification arising from oxidative DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Sequential changes in chromatin structure during transcriptional activation in the beta globin LCR and its target gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Histone modifications for human epigenome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4(+) memory T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Crosstalk between epigenetic readers regulates the MOZ/MORF HAT complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

New insights into the functions and localization of nuclear transglutaminase 2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Role of tissue transglutaminase-2 (TG2)-mediated aminylation in biological processes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Chromatin Remodelers: From Function to Dysfunction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The yeast SNF2/SWI2 protein has DNA-stimulated ATPase activity required for transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Lateral Thinking: How Histone Modifications Regulate Gene Expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Traceless Synthesis of Asymmetrically Modified Bivalent Nucleosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The human histone acetyltransferase P/CAF is a promiscuous histone propionyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Structure and organization of chromatin fiber in the nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Protein lysine acylation and cysteine succination by intermediates of energy metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Global analysis of H3K4me3 and H3K27me3 profiles in glioblastoma stem cells and identification of SLC17A7 as a bivalent tumor suppressor gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Identification and characterization of propionylation at histone H3 lysine 23 in mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Crystal structure of the nucleosome core particle at 2.8 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Mitochondrial acetylcarnitine provides acetyl groups for nuclear histone acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Chromatin as dynamic 10-nm fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Inhibition of transglutaminase 2 mitigates transcriptional dysregulation in models of Huntington disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Dynamic nucleosomes and gene transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

SIRT5 Regulates both Cytosolic and Mitochondrial Protein Malonylation with Glycolysis as a Major Target

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Reading between the Lines: "ADD"-ing Histone and DNA Methylation Marks toward a New Epigenetic "Sum".

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Advances and challenges in understanding histone demethylase biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The first identification of lysine malonylation substrates and its regulatory enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Fine analysis of the chromatin structure of the yeast SUC2 gene and of its changes upon derepression. Comparison between the chromosomal and plasmid-inserted genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Combinatorial complexity in chromatin structure and function: revisiting the histone code

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Genome-wide views of chromatin structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Nucleosome-specific, time-dependent changes in histone modifications during activation of the early growth response 1 (Egr1) gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Cancer epigenetics reaches mainstream oncology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Interpreting the language of histone and DNA modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Intracellular crotonyl-CoA stimulates transcription through p300-catalyzed histone crotonylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Epigenetic transcriptional regulation of the growth arrest-specific gene 1 (Gas1) in hepatic cell proliferation at mononucleosomal resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Elucidating Combinatorial Chromatin States at Single-Nucleosome Resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Metabolomics-assisted proteomics identifies succinylation and SIRT5 as important regulators of cardiac function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Methods for identifying higher-order chromatin structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

HBO1 HAT complexes target chromatin throughout gene coding regions via multiple PHD finger interactions with histone H3 tail.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

RNAPol-ChIP: a novel application of chromatin immunoprecipitation to the analysis of real-time gene transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Histone methylation by PRC2 is inhibited by active chromatin marks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Single-molecule decoding of combinatorially modified nucleosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Histone demethylation mediated by the nuclear amine oxidase homolog LSD1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The language of covalent histone modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Reading the Combinatorial Histone Language

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The Functional Analysis of Histone Acetyltransferase MOF in Tumorigenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Metabolic control of methylation and acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

A nuclear pyruvate dehydrogenase complex is important for the generation of acetyl-CoA and histone acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Independent dynamic regulation of histone phosphorylation and acetylation during immediate-early gene induction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Factor binding and chromatin modification in the promoter of murine Egr1 gene upon induction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Interaction of propionylated and butyrylated histone H3 lysine marks with Brd4 bromodomains

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

14-3-3 interaction with histone H3 involves a dual modification pattern of phosphoacetylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Functions of SAGA in development and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Mediator requirement for both recruitment and postrecruitment steps in transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Combinatorial patterns of histone acetylations and methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Histone acetyltransferases: challenges in targeting bi-substrate enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

ATP-citrate lyase links cellular metabolism to histone acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Comparative epigenomic annotation of regulatory DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Lysine succinylation and lysine malonylation in histones.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Posttranslational modifications of human histone H3: an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

SAHA regulates histone acetylation, Butyrylation, and protein expression in neuroblastoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

MOZ and MORF acetyltransferases: Molecular interaction, animal development and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

High-resolution genome-wide mapping of the primary structure of chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

Identification and verification of lysine propionylation and butyrylation in yeast core histones using PTMap software

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

YEATS2 is a selective histone crotonylation reader.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F5584_2017_58

21 January 2018

Identifiers

DOI

10.1007/5584_2017_58

1 reference

11 September 2017

1 reference