Genome-wide discovery of G-quadruplex forming sequences and their functional relevance in plants (Q39669298)

13 September 2017

Genome-wide discovery of G-quadruplex forming sequences and their functional relevance in plants (English)

1 reference

13 September 2017

Rohini Garg

1

1 reference

13 September 2017

Jyoti Aggarwal

series ordinal

2

1 reference

13 September 2017

Bijal Thakkar

series ordinal

3

1 reference

13 September 2017

language of work or name

English

0 references

publication date

21 June 2016

1 reference

13 September 2017

1 reference

13 September 2017

6

1 reference

13 September 2017

28211

1 reference

describes a project that uses

13 September 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

G-quadruplexes and their regulatory roles in biology

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The Responses of Arabidopsis Early Light-Induced Protein2 to Ultraviolet B, High Light, and Cold Stress Are Regulated by a Transcriptional Regulatory Unit Composed of Two Elements

14 September 2017

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Telomeric G-quadruplexes are a substrate and site of localization for human telomerase

14 September 2017

1 reference

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G4-associated human diseases

14 September 2017

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Replication of Structured DNA and its implication in epigenetic stability

14 September 2017

1 reference

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DNA and RNA quadruplex-binding proteins

14 September 2017

1 reference

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Ecological and evolutionary significance of genomic GC content diversity in monocots

14 September 2017

1 reference

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RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer

14 September 2017

1 reference

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Elevated levels of G-quadruplex formation in human stomach and liver cancer tissues

14 September 2017

1 reference

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QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs

14 September 2017

1 reference

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RAV genes: regulation of floral induction and beyond

14 September 2017

1 reference

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Existence and consequences of G-quadruplex structures in DNA.

14 September 2017

1 reference

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Genomes and G-quadruplexes: for better or for worse.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Human origin recognition complex binds preferentially to G-quadruplex-preferable RNA and single-stranded DNA

14 September 2017

1 reference

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14 September 2017

1 reference

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Quantitative visualization of DNA G-quadruplex structures in human cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

DNA secondary structures: stability and function of G-quadruplex structures

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Capture and identification of proteins that bind to a GGA-rich sequence from the ERBB2 gene promoter region

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

5'-UTR RNA G-quadruplexes: translation regulation and targeting

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Experimental approaches to identify cellular G-quadruplex structures and functions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Sex and the singular DM domain: insights into sexual regulation, evolution and plasticity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

G4 motifs correlate with promoter-proximal transcriptional pausing in human genes.

14 September 2017

1 reference

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Enrichment map: a network-based method for gene-set enrichment visualization and interpretation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in Saccharomyces cerevisiae

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Genome-wide colonization of gene regulatory elements by G4 DNA motifs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Selection for the G4 DNA motif at the 5' end of human genes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

A sequence-independent study of the influence of short loop lengths on the stability and topology of intramolecular DNA G-quadruplexes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Mechanical stress induces biotic and abiotic stress responses via a novel cis-element

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

DNA architecture: from G to Z.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

The genes encoding Arabidopsis ORC subunits are E2F targets and the two ORC1 genes are differently expressed in proliferating and endoreplicating cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Prevalence of quadruplexes in the human genome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Highly prevalent putative quadruplex sequence motifs in human DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

MutSalpha binds to and promotes synapsis of transcriptionally activated immunoglobulin switch regions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Plant interstitial telomere motifs participate in the control of gene expression in root meristems

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Targeted Detection of G-Quadruplexes in Cellular RNAs.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

G-quadruplex structures are stable and detectable in human genomic DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

STAMP: a web tool for exploring DNA-binding motif similarities

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

G-quadruplexes in promoters throughout the human genome

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Arabidopsis Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Gene function correlates with potential for G4 DNA formation in the human genome

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4914980

G-quadruplexes and metal ions

21 August 2018

1 reference

Detection of G-quadruplex DNA in mammalian cells

21 January 2018

1 reference

Structural Features of Intra- and Intermolecular G-Quadruplexes Derived from Telomeric Repeats

21 January 2018

1 reference

Identification of novel interactors of human telomeric G-quadruplex DNA

21 January 2018

1 reference

Dynamic roles for G4 DNA in the biology of eukaryotic cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27324275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cellular nucleic-acid-binding protein, a transcriptional enhancer of c-Myc, promotes the formation of parallel G-quadruplexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27324275

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP28211

1 reference

13 September 2017

1 reference

13 September 2017

PubMed publication ID

27324275

1 reference