Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach (Q39696580)

14 September 2017

Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach (English)

1 reference

14 September 2017

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2

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14 September 2017

Leendert W Hamoen

1

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14 September 2017

Anne de Jong

series ordinal

3

1 reference

14 September 2017

Siger Holsappel

series ordinal

4

1 reference

14 September 2017

Oscar P Kuipers

series ordinal

5

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14 September 2017

language of work or name

English

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publication date

1 December 2002

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14 September 2017

Nucleic Acids Research

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14 September 2017

30

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14 September 2017

24

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14 September 2017

5517-5528

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Transcriptome analysis and related databases of Lactococcus lactis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Bacillus subtilis comZ (yjzA) negatively affects expression of comG but not comK.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

DNA bending and wrapping around RNA polymerase: a "revolutionary" model describing transcriptional mechanisms.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

A molecular switch controlling competence and motility: competence regulatory factors ComS, MecA, and ComK control sigmaD-dependent gene expression in Bacillus subtilis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

The competence transcription factor of Bacillus subtilis recognizes short A/T-rich sequences arranged in a unique, flexible pattern along the DNA helix

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Structural requirements for DNA binding of GCM proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Transcriptional activation by recruitment

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Competence-specific induction of the Bacillus subtilis RecA protein analog: evidence for dual regulation of a recombination protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Use of gel retardation to analyze protein-nucleic acid interactions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

FATE OF TRANSFORMING DEOXYRIBONUCLEIC ACID IN BACILLUS SUBTILIS.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

A new Bacillus subtilis gene, med, encodes a positive regulator of comK.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Binding and transport of transforming DNA by Bacillus subtilis: the role of type-IV pilin-like proteins--a review

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

A Bacillus subtilis large ORF coding for a polypeptide highly similar to polyketide synthases

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Molecular cloning and sequence of comK, a gene required for genetic competence in Bacillus subtilis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Ultraviolet inactivation and excision-repair in Bacillus subtilis I. Construction and characterization of a transformable eightfold auxotrophic strain and two ultraviolet-sensitive derivatives

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Distance-dependent translational coupling and interference in Lactococcus lactis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

The bdbDC operon of Bacillus subtilis encodes thiol-disulfide oxidoreductases required for competence development

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

The Bacillus subtilis competence transcription factor, ComK, overrides LexA-imposed transcriptional inhibition without physically displacing LexA.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Antibiotic-resistance cassettes for Bacillus subtilis.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

comF, a Bacillus subtilis late competence locus, encodes a protein similar to ATP-dependent RNA/DNA helicases

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Characterization of comE, a late competence operon of Bacillus subtilis required for the binding and uptake of transforming DNA.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Differential expression of two closely related deoxyribonuclease genes, nucA and nucB, in Bacillus subtilis

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140081

Expression of the ATP-dependent deoxyribonuclease of Bacillus subtilis is under competence-mediated control

20 August 2018

1 reference

12 December 2020

comK encodes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis

1 reference

12 December 2020

Regulatory inputs for the synthesis of ComK, the competence transcription factor of Bacillus subtilis

1 reference

12 December 2020

Regulated expression of the dinR and recA genes during competence development and SOS induction in Bacillus subtilis

1 reference

12 December 2020

Sigma A recognition sites in the Bacillus subtilis genome

1 reference

12 December 2020

Rok (YkuW) regulates genetic competence in Bacillus subtilis by directly repressing comK

1 reference

12 December 2020

NucA is required for DNA cleavage during transformation of Bacillus subtilis

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKF698

1 reference

14 September 2017

1 reference

14 September 2017

PubMed publication ID

12490720

1 reference