Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure (Q39715585)

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scientific article published on February 1996

Language	Label	Description	Also known as
English	Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure	scientific article published on February 1996

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

0 references

author name string

Schmidt S

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Beigelman L

2

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Karpeisky A

3

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Usman N

4

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Sorensen US

5

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Gait MJ

6

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

language of work or name

0 references

publication date

1 February 1996

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

24

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

4

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

573-581

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Reconstitution of hairpin ribozyme activity following separation of functional domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Three-dimensional structure of a hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Catalytically active geometry in the reversible circularization of ‘mini-monomer’ RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Intracellular immunization of human fetal cord blood stem/progenitor cells with a ribozyme against human immunodeficiency virus type 1.

1 reference

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14 September 2017

RNA catalytic properties of the minimum (-)sTRSV sequence

1 reference

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14 September 2017

Sequences required for self-catalysed cleavage of the satellite RNA of tobacco ringspot virus

1 reference

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14 September 2017

Two sequences participating in the autolytic processing of satellite tobacco ringspot virus complementary RNA

1 reference

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14 September 2017

Binding and cleavage of nucleic acids by the "hairpin" ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Critical chemical features in trans-acting-responsive RNA are required for interaction with human immunodeficiency virus type 1 Tat protein

1 reference

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14 September 2017

Use of synthetic oligoribonucleotides to probe RNA-protein interactions in the MS2 translational operator complex

1 reference

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14 September 2017

Exploiting the chemical synthesis of RNA.

1 reference

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14 September 2017

Mutagenesis of the hairpin ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Methylphosphonate mapping of phosphate contacts critical for RNA recognition by the human immunodeficiency virus tat and rev proteins

1 reference

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14 September 2017

Ribozymes as human therapeutic agents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Inhibition of gene expression with ribozymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

RNA cleavage by small catalytic RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Synthesis, deprotection, analysis and purification of RNA and ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Synthetic oligoribonucleotides carrying site-specific modifications for RNA structure-function analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

'Hairpin' catalytic RNA model: evidence for helices and sequence requirement for substrate RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Chemical synthesis of a biologically active natural tRNA with its minor bases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

14 September 2017

Probing RNA tertiary structure: interhelical crosslinking of the hammerhead ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

15 June 2018

Quantitative analysis of one-dimensional gel electrophoresis profiles.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

15 June 2018

Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

15 June 2018

In vitro selection of active hairpin ribozymes by sequential RNA-catalyzed cleavage and ligation reactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145697

15 June 2018

Chemical synthesis of oligoribonucleotides containing 2-aminopurine: substrates for the investigation of ribozyme function

1 reference

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4 November 2018

Ionic requirements for RNA binding, cleavage, and ligation by the hairpin ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flexibility of the Bulge Formed Between a Hairpin Ribozyme and Deoxy-Substrate Analogues

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Four ribose 2'-hydroxyl groups essential for catalytic function of the hairpin ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimization of an anti-HIV hairpin ribozyme by in vitro selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A photo-cross-linkable tertiary structure motif found in functionally distinct RNA molecules is essential for catalytic function of the hairpin ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure-mapping of the hairpin ribozyme. Magnesium-dependent folding and evidence for tertiary interactions within the ribozyme-substrate complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modification of primary structures of hairpin ribozymes for probing active conformations

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationships between apparent binding energies measured in site-directed mutagenesis experiments and energetics of binding and catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship between 2'-hydroxyls and magnesium binding in the hammerhead RNA domain: a model for ribozyme catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel guanosine requirement for catalysis by the hairpin ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/8604296

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/24.4.573

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https://api.fatcat.wiki/v0/release/ue2q2q3ei5hmjiwmuuzqwq5tum

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