Patterns of tandem repetition in plant whole genome assemblies. (Q39999785)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Patterns of tandem repetition in plant whole genome assemblies.	scientific article

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

title

Patterns of tandem repetition in plant whole genome assemblies (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

main subject

whole genome sequencing

1 reference

based on heuristic

inferred from title

author

Rafael Navajas-Pérez

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

Andrew H Paterson

series ordinal

2

object named as

Andrew H Paterson

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

publication date

26 February 2009

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

published in

Molecular Genetics and Genomics

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

volume

281

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

issue

6

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

page(s)

579-590

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

cites work

Identification of the most represented repeated motifs in Arabidopsis thaliana microsatellite loci

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2FS00438-009-0433-Y

retrieved

21 January 2018

L1 repeat is a basic unit of heterochromatin satellites in cetaceans

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2FS00438-009-0433-Y

retrieved

21 January 2018

Evolution of satellite DNAs from the genus Palorus--experimental evidence for the "library" hypothesis

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1007%2FS00438-009-0433-Y

retrieved

21 January 2018

Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maize DNA-sequencing strategies and genome organization

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem-repetitive noncoding DNA: forms and forces

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Re-annotation of the physical map of Glycine max for polyploid-like regions by BAC end sequence driven whole genome shotgun read assembly

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural analysis and physical mapping of a pericentromeric region of chromosome 5 of Arabidopsis thaliana

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome size and the proportion of repeated nucleotide sequence DNA in plants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytogenetic tools for Arabidopsis thaliana

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new rice repetitive DNA shows sequence homology to both 5S RNA and tRNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Chlamydomonas genome reveals the evolution of key animal and plant functions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conserved patterns of bending in satellite and nucleosome positioning DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discovering and detecting transposable elements in genome sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization and distribution of a 145-bp tandem repeat family in the genus Populus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The controversial telomeres of lily plants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tandem repeats finder: a program to analyze DNA sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

B-chromosome evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Repetitive sequences in the genome of Anemone blanda: identification of tandem arrays and of dispersed repeats

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Computational and experimental characterization of physically clustered simple sequence repeats in plants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rice (Oryza sativa) centromeric regions consist of complex DNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficient capture of unique sequences from eukaryotic genomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence composition and genome organization of maize.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Sorghum bicolor genome and the diversification of grasses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in satellite DNA profiles--causes and effects

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of rDNAs and tandem repeats in the heterochromatin of Brassica rapa

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Towards an accurate sequence of the rice genome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The map-based sequence of the rice genome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The TAIR database

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tandemly repeated DNA family originated from SINE-related elements in the European plethodontid salamanders (Amphibia, Urodela).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel species-specific tandem repeat DNA family from Sinapis arvensis: detection of telomere-like sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular phylogeny of oysters based on a satellite DNA related to transposons.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rice as a model for centromere and heterochromatin research

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms and rates of genome expansion and contraction in flowering plants.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The centromere paradox: stable inheritance with rapidly evolving DNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Concerted evolution of repetitive DNA sequences in eukaryotes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An intermediate grade of finished genomic sequence suitable for comparative analyses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distribution and sequence analysis of the centromere-associated repetitive element CEN38 of Sorghum bicolor (Poaceae).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Localization of specific repetitive DNA sequences in individual rice chromosomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Macromolecular organization and genetic mapping of a rapidly evolving chromosome-specific tandem repeat family (B77) in cotton (Gossypium).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A cereal centromeric sequence

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of trinucleotide SSR motifs in wheat

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel repetitive sequence of sugar cane, SCEN family, locating on centromeric regions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of highly repetitive sequences of Arabidopsis thaliana

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin and evolution of the variability in a Y-specific satellite-DNA of Rumex acetosa and its relatives

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chlamydomonas telomere sequences are A+T-rich but contain three consecutive G-C base pairs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PlantSat: a specialized database for plant satellite repeats

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Similarity of structural features and evolution of satellite DNAs from palorus subdepressus (Coleoptera) and related species

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19242726

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00438-009-0433-Y

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

PubMed publication ID

19242726

1 reference

stated in

Europe PubMed Central

PubMed publication ID

19242726

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19242726%20AND%20SRC:MED&resulttype=core&format=json

retrieved

22 January 2020

ResearchGate publication ID

24040019

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q39999785&oldid=2203309029"