Identification and analysis of evolutionarily cohesive functional modules in protein networks (Q30002330)

From Wikidata

Jump to navigation Jump to search

scientific article (publication date: March 2006)

edit

Language	Label	Description	Also known as
English	Identification and analysis of evolutionarily cohesive functional modules in protein networks	scientific article (publication date: March 2006)

Statements

instance of

scholarly article

0 references

title

Identification and analysis of evolutionarily cohesive functional modules in protein networks (English)

0 references

author

Monica Campillos

object named as

M. Campillos

series ordinal

1

0 references

publication date

1 March 2006

0 references

published in

Genome Research

1 reference

stated in

PubMed

volume

16

0 references

issue

3

0 references

page(s)

374-382

0 references

cites work

Systematic association of genes to phenotypes by genome and literature mining

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Complex genomic rearrangements lead to novel primate gene function

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Organismal complexity, protein complexity, and gene duplicability

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

The balance of driving forces during genome evolution in prokaryotes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

STRING: a database of predicted functional associations between proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Hierarchical organization of modularity in metabolic networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

The COG database: new developments in phylogenetic classification of proteins from complete genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Phylogenetic analyses of the constituents of Type III protein secretion systems

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

A combined algorithm for genome-wide prediction of protein function

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

The bacterial flagellum: reversible rotary propellor and type III export apparatus

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Genome phylogeny based on gene content

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Conservation of gene order: a fingerprint of proteins that physically interact

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Measuring genome evolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

22 May 2017

Biased biological functions of horizontally transferred genes in prokaryotic genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Quantifying modularity in the evolution of biomolecular systems

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Trends between gene content and genome size in prokaryotic species with larger genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Genome evolution reveals biochemical networks and functional modules

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Scaling laws in the functional content of genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Phylogenetics and the cohesion of bacterial genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Dosage sensitivity and the evolution of gene families in yeast

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Comparing bacterial genomes through conservation profiles.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

The phylogenetic extent of metabolic enzymes and pathways

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Modular organization of cellular networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Origins of the 2,4-dinitrotoluene pathway

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

The identification of functional modules from the genomic association of genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Computational method to assign microbial genes to pathways

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Gene context conservation of a higher order than operons.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

High rates of conjugation in bacterial biofilms as determined by quantitative in situ analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Type III secretion machines: bacterial devices for protein delivery into host cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Genomic evidence for two functionally distinct gene classes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Selfish operons and speciation by gene transfer

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

3 June 2018

Evolution of vitamin B6 (pyridoxine) metabolism by gain and loss of genes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

26 November 2018

Pathway length and evolutionary constraint in amino acid biosynthesis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

26 November 2018

Identification of functional links between genes using phylogenetic profiles

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

26 November 2018

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

26 November 2018

Characterization of (R/S)-mecoprop [2-(2-methyl-4-chlorophenoxy) propionic acid]-degrading Alcaligenes sp.CS1 and Ralstonia sp. CS2 isolated from agricultural soils

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

26 November 2018

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1415216

retrieved

26 November 2018

Gene order is not conserved in bacterial evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16449501

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conserved gene clusters in bacterial genomes provide further support for the primacy of RNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16449501

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TRASH: a novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16449501

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modularity in the gain and loss of genes: applications for function prediction

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16449501

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the etiology of haploinsufficiency

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16449501

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene order breakpoint evidence in animal mitochondrial phylogeny

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16449501

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.4336406

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3895235

OpenCitations bibliographic resource ID

3895235

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3895235

PMC publication ID

1415216

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3895235

PubMed publication ID

16449501

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3895235

ResearchGate publication ID

7323516

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30002330&oldid=1551539169"